Atopobium sp. oral taxon 416: J4859_06425
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Entry
J4859_06425 CDS
T07170
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
atb
Atopobium sp. oral taxon 416
Brite
KEGG Orthology (KO) [BR:
atb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atb03400
]
J4859_06425
Enzymes [BR:
atb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4859_06425
DNA repair and recombination proteins [BR:
atb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
J4859_06425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
RIF5_SNase_2
Motif
Other DBs
NCBI-ProteinID:
QUC04554
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All DBs
Position
1184556..1187855
Genome browser
AA seq
1099 aa
AA seq
DB search
MAEHIIVTNAEGIASEPVRKALKEAQRAGGRPTLFVPGLPQQDEAQRVFAQEGPDFFGVD
VTSMSSWLEERWEAWGDGTHLVSPPERTLIFQQLLSGGETASLTPNPGTLRVLGQLARSA
LPYLPLNSDGNVEGEQAKQANLTSAEIEAIEWVARYSKELCARNLTEGCVAAGTIIQRLL
KAQVTLPAVVVSGFATMRRPQRELLVQLAQHSHVWIVFETGNEVATAQTAQLIEQLKQEA
AAADVVCEVEEDHYKPQAVRTTGLTALKNAIFQGRNDLTADGSVELLYPAGSHAEAELIA
RRIEDLVKQGERQIVVAAPSAERAWRELAPKLVARGISVEGSISKNLLSCDAGRAFLEFA
QKVATLNQLAESWPEPTQTKEGETAIRLGDMSWWPPEELIDFFENDIAQMSVYRAQRLDK
RWRGDRLLTPQEVLGTLQKQNSCSPIVAAATRELLKGHIGGAAMKLAEPYLNHTENRAID
DYAIDAEGEQVNLHKRPHDPYADAEAQGVLRGVVNASAVLRSQGLHYDPKNDSADKLCEV
VEYLKQPLGETTVSLHPAVEAGGSRGRVLIVSKSEAATMEPASADVLISCAETSTESAVD
DGDDVVSSLFERLNIDPAQDPMMSARARFYRMLCVPIHKFICERTQFGADSKQCFPSVMV
QELLGAYGMSDEKPKQVKACIDNHILVTELSEYDAARNISAEGKKSEVTSHEKIGPTGSI
SKASRPYISFPSPTKVELYHGKPVLSASQIESYLECPYKWFSMRRLNLTNSDAEFGNMEM
GTFVHRVLQVTGERMLTQALAGGGISEEDLKREPWTEVAGSRVSDPKSLEVAQKLLNEEF
DEHLAHQYIVKGKNSRPQAFVPHTEEDQGKLMALRQDLLSALKYQGELFDGFEPRFFEWN
FGKEEPVEYAGVYMVGTIDRIDVNAHKQALVIDYKHRSANSFFSDYAVFPPKQTKKNGSK
KAELEPEGEEDRPFVLPKHIQTLAYAQILRRLTGLKVCGGVYLCTRRDHGLSGAVSEHMA
DIVYGDHQLSSRSLNRIAVPPGFTGTSSEESGFNALLDTTEDLIAEKIEELLDGNIEANP
RDKDACKFCPVLNCEKRQP
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggctgaacatatcatcgtgaccaatgctgagggaatcgcctccgaaccggttcggaag
gcgctcaaggaagcacagagagccggtgggcgccccaccctgtttgtgccggggttaccc
cagcaagatgaagcccaacgcgtgtttgcgcaggaaggtcccgatttcttcggcgtcgat
gtgaccagcatgtcgagctggctcgaagagcgttgggaagcctggggagatggcacacac
ctcgtgagcccgcccgagcggactctgatctttcagcaactgctctccggtggagagacg
gcgagcctaactcccaatccgggtaccctgagggtacttggacagcttgcgcgctccgcg
cttccatatttgccactcaatagcgatgggaatgtcgagggtgaacaggcaaaacaggcg
aatctcacgagtgcagagattgaagcgattgagtgggtcgcccgctatagcaaagaactt
tgtgcccgtaacctcaccgaaggctgtgtagcggcaggcactataatccagcgcctgctt
aaggctcaggttacgctgccggctgtcgtcgtcagtggctttgcgacgatgcggcgtccg
cagcgtgaactcttggttcagcttgctcagcacagccacgtctggattgtctttgagacg
ggaaatgaggtggcgactgcgcagactgctcagctcatagaacagttgaaacaggaagcc
gctgcagctgacgttgtgtgtgaggtagaggaagaccactacaaaccacaagcggtacgc
actacgggattgactgccttgaagaatgcgattttccagggtagaaacgacctcaccgca
gatggctcggtagagctcttgtaccccgccggctcccatgcagaagcagaattgatcgcg
cgtcgtattgaggatctggtcaaacagggagaaagacagatcgtagttgcggccccctct
gcggagcgggcgtggagagagctggccccaaaactggtagctcggggtatctcggttgaa
gggtcgatcagtaagaatctgctgtcctgtgacgcaggaagggcatttctggagtttgca
cagaaggtagcaacgctcaaccagcttgccgagagttggcctgagcccacacagactaaa
gagggggagacagcaattcgactcggcgatatgagctggtggccacctgaagagctgatt
gacttcttcgaaaacgatattgcccagatgagtgtctatcgagcgcagcggctcgataag
cgctggagaggagatcggctcctcaccccacaggaagtcctgggtaccctgcagaagcag
aacagctgctctccgatagtcgctgcagcgacgagagagctgctcaaaggccacatcggt
ggtgctgccatgaagctggcagagccctatctcaatcacaccgaaaatcgagcgatcgat
gactatgcgatcgatgcggaaggtgagcaggtgaatttgcacaagcgaccgcatgatccc
tatgccgacgcagaggcacagggtgttctgcgtggcgtggtgaacgcttctgcagtactg
agaagtcagggcttgcattacgatcccaagaacgattccgcggacaaactgtgtgaggtg
gtcgagtacttaaaacagcctttaggggagaccaccgtatccctgcaccccgccgttgag
gctgggggatcacgaggacgggtgctgattgtcagcaaatcggaagctgcaacgatggag
cctgcgagcgccgatgttctgatcagctgcgcagagacctcgacagagtctgcggtggat
gacggagatgatgtggtgagctcgctctttgagcggctcaatatcgaccctgctcaagat
cccatgatgtcagcgcgtgcacggttctaccggatgctgtgcgtgcccatccacaaattc
atctgtgagcggacgcagttcggtgcagattcaaaacagtgttttccctcggtcatggtg
caggaactcttaggagcctatgggatgagcgatgagaaaccgaagcaggtcaaggcctgc
attgacaaccatattctggtaactgaattgagtgaatatgatgcggcgcgcaatatctct
gccgaaggtaagaaatctgaggtcacctcacatgagaaaatcggaccaaccggttcgatc
agcaaggcttcacgtccctacatctcgtttccttctccaacgaaggtggagctctatcat
ggaaagccggttctgtccgcctctcagatagagtcctatctcgagtgcccctataagtgg
ttcagtatgagaagactcaatttaacaaacagcgatgctgaattcggcaacatggagatg
ggaaccttcgtacatcgcgtgctccaggtgactggcgagcgaatgctcacacaggcgctt
gcgggaggtggcatctccgaagaggatctcaaacgtgagccgtggactgaggtagcagga
tctcgggtatcggatccgaagagcttagaggtcgctcagaagcttttgaatgaggagttc
gatgagcatctagcgcaccaatatatagtgaaggggaagaatagccgtccacaggccttt
gtaccccatactgaggaggatcagggaaagctaatggcattgcggcaggatctgctctct
gccctgaagtatcaaggcgaactctttgatgggtttgagccacgattctttgagtggaat
ttcggtaaagaggagccggttgaatatgctggcgtctacatggtaggcaccattgaccgt
atcgacgtcaatgcccacaagcaggcgcttgtgatcgattacaagcatcgttccgcgaat
agcttctttagcgactacgcagttttccctccgaagcagacgaagaaaaacgggagcaaa
aaagcggagctagaaccagaaggggaagaggaccgaccctttgtgctacccaagcatatc
cagacgcttgcatatgcgcagatcctccgcaggcttaccggccttaaggtctgcggtggc
gtgtatctgtgcacaaggagagatcatgggctgtcaggcgcagtgagcgagcatatggcc
gacattgtctacggtgaccatcagctcagctcacgctcactgaaccgcattgcggtgccc
cctggcttcaccggtacctcctctgaggaaagcggcttcaatgccctgctcgacacgacg
gaggacctgatcgcggagaagattgaagagctgttggacggcaatattgaagcgaatccg
cgtgacaaagacgcctgtaaattttgtccggttttgaactgtgagaagagacaaccatga
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integrated database retrieval system
