Atopobium sp. oral taxon 416: J4859_06435
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Entry
J4859_06435 CDS
T07170
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
atb
Atopobium sp. oral taxon 416
Pathway
atb03030
DNA replication
atb03430
Mismatch repair
atb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4859_06435 (dnaE)
03430 Mismatch repair
J4859_06435 (dnaE)
03440 Homologous recombination
J4859_06435 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atb03032
]
J4859_06435 (dnaE)
03400 DNA repair and recombination proteins [BR:
atb03400
]
J4859_06435 (dnaE)
Enzymes [BR:
atb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J4859_06435 (dnaE)
DNA replication proteins [BR:
atb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J4859_06435 (dnaE)
DNA repair and recombination proteins [BR:
atb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J4859_06435 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
HHH_3
RHA1_ro05818_N
Motif
Other DBs
NCBI-ProteinID:
QUC04556
LinkDB
All DBs
Position
1191426..1195328
Genome browser
AA seq
1300 aa
AA seq
DB search
MSFVHLHNHSDFSLLDGACRIPDMVKRAVEFHMPAVALTDHGYMFGIPNLDLECRKYNDV
QENMKQWRHDIECFSKGWDLEEPKPDAPDADYFHAVHAQWERDNQLWESSGHNVDAVKAK
KPRELIKPIFGCEAYFIQDNCIPHGTKQVRYHLILLAKNETGYKNLIKCMSKAAGHEMMY
YKPRITFAMLEQYHEGLICLSACVQGIIPQMIMAGEFDEAREWTKKFKDLFGEDFYIEIQ
DHGLKFSRGWNDRSLDERLVKLAHELDIKVVATNDIHYLTREDASTQDILSCIGKNTTIN
DSSRMRMEGAEFYLKSEEEMRKLFDWVPQACDNTLEVADKCNYELDWTHMYLPQFPGLKP
GETAEQRFRAECEKGLARRYGKDWKHVTINGINVEDRYEHEAGIIIDKGFANYFLIVQDY
VQWAKDHGIGVGPGRGSAAGAIVAYAMNITNFDPLENGLMFERFLSPQRTEMPDIDMDFD
DEHLQDVLQHVRDVYGEDRVCKVITYSTIKAKQAINDAARVLGFPVYVGQRLSKMLSNDA
SLKLKNALHKNPDRPDQYSPDFEEAYNKDADAKSIIDAAMSIEGLTRGEGVHACATLIAP
TPVTDHVPTKLDTKGNVTITQYEGHSVADMGLLKMDFLGLRTLTVINKALQNIKCSYPNA
SDIARMPEQVKKTIKLGAACVDIDMDKVDFTDPAIYRLLSEGKTAGVFQVESAGMTATIK
QMQPTEYKHIVALIALYRPGPLGAGMVTSYIKRMHGEEPVVYYDDRLKDILEETYGTMVY
QEQVMQISMKMCGFTPGESDSRIRKPVAKKKIKMLTSQVFHWEATGADETIYDHWMNGAV
KNGYKKEIAQKIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKAHFPKEYMASVLSSYMG
KTDKIVHYVSACRHEGINILPPDINESGRDFTATKDGIRFGFAGIRGVGESVGETIMAER
TKSGPFKTVHDFVDRVDASQANRRVVEALIKSGAFDFTGYTRKQMMHFVDKNNARNIIES
AAKRQRDRAQGQVSFFDLLGDVSDSGFEDKIPAPDGIEWDRRTKLAQEHEVLGIYVSDHP
LRPYEYALSKARDYKISDISATEDAVDPVSGATVARHVIPDGKVVRLAGMMSGIDKKTTK
TGKAMAIVQLADMEGETTVVVFPKLYETCQAALCGEIDEQTGETIGDVFLKVRGKLERSD
RGDQIIAESVEPLILNSETNTPKVLEVNLASDMLSAGHMEQLGSVFNRYPGLDYVELRIE
GANSGDLTCFELPTKVDAHNMVLIAEVSDVVGKHGKVVVA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgttcatcttcacaatcactctgacttttcgctgctcgacggcgcttgccgt
attcctgatatggtaaagagagctgttgagtttcatatgccggcggtggccttaacggat
cacggctacatgttcggtatccccaatctggacctggagtgccgcaagtacaatgacgtc
caggagaatatgaagcagtggcgccacgacatcgaatgcttcagcaaaggttgggacctg
gaagagcccaagcctgatgccccggatgcggactacttccatgcggtgcacgcccagtgg
gagcgggacaaccagctgtgggaatcctcaggccataatgtggacgcggtcaaagcgaag
aagccgcgtgaactgatcaagccgatcttcggctgtgaggcctactttattcaggacaac
tgcattccgcacggtaccaagcaggtccgctatcacctgatccttctggcgaagaacgag
accggctacaagaacctgattaagtgcatgtcgaaagcggcggggcacgagatgatgtac
tacaagccccgtatcacctttgcgatgctcgagcagtaccacgaggggctgatctgcctc
tccgcctgcgtgcaaggcatcatcccgcagatgattatggccggcgagttcgacgaagcc
cgggaatggaccaagaagttcaaggacctcttcggtgaggacttctacatcgagatccag
gaccacgggctcaagttctctcgcggctggaacgaccgtagcctcgacgagcgcttggtg
aagctcgcccatgagctcgatatcaaagtcgttgccaccaacgatatccactacctgaca
cgtgaggatgcctccactcaggacatcctctcctgcattgggaagaacaccacgatcaac
gactcctcccgcatgcggatggagggcgctgagttctacctcaagagtgaagaggagatg
cgtaagctcttcgattgggtaccgcaggcctgcgacaatacgctcgaggttgccgacaag
tgcaactatgagctcgactggacgcacatgtacctgccacagttcccaggtctgaagcca
ggggagaccgccgagcagcgcttccgtgcggagtgcgagaagggtctggcacgccgttac
ggcaaagactggaagcacgtcacgatcaatggcatcaacgtcgaggaccgctacgagcac
gaagccggcatcattatcgacaaaggctttgcgaactacttcctgatcgttcaggactat
gtccagtgggccaaggaccatgggatcggtgtcgggccaggccgtggctctgccgccggc
gctatcgtcgcctacgcgatgaacatcacgaacttcgatccgttggagaacggtctgatg
ttcgagcggttcctatccccgcagcgtaccgagatgcccgatatcgatatggacttcgac
gatgagcacctgcaggatgtcctgcagcacgtgcgtgacgtctacggcgaggaccgcgtc
tgtaaggtcatcacctactccaccatcaaggcgaagcaggctatcaacgatgcggcccgt
gtattgggcttcccggtctacgtgggacagcgactctcaaagatgctctccaacgacgcg
agcctgaagctcaagaatgcgctgcacaagaatccggataggccggaccaatactctccg
gactttgaggaagcctacaacaaggatgcggacgccaagtccattatcgacgctgccatg
tccatcgagggcctgactcgtggcgagggtgtgcacgcttgcgcaaccctgatcgctccg
accccggtcaccgaccatgtgcctaccaagctggataccaagggcaacgtcacgatcacc
cagtacgaaggccattcggtcgcagacatgggcctgctgaagatggacttcctgggcttg
agaaccctcaccgttatcaacaaagccctacagaatatcaagtgcagctatccgaacgcc
tccgatatcgcgcggatgcctgagcaggtgaaaaagaccattaaactaggcgccgcctgt
gtcgatatcgatatggacaaagtcgactttacggaccctgcgatctataggctcttaagt
gaaggcaagaccgccggcgtcttccaggtcgagtccgcgggcatgaccgccacgatcaag
cagatgcagccgaccgaatacaagcacatcgtcgcactgatcgccctctaccgtccgggt
cctctaggcgccggtatggtcacgagctacatcaagcgtatgcacggcgaagagccggtt
gtctactacgatgaccgcctcaaagacatcctggaagagacttacggaaccatggtctac
caggaacaggtcatgcagatctcgatgaagatgtgcggctttaccccgggcgagtcagat
agccgtatccgtaagccggtggctaagaaaaagatcaagatgctcacgagccaggtcttc
cactgggaggccacaggcgccgatgagaccatatacgaccactggatgaacggcgcggtc
aagaacggctacaagaaggagattgcccagaagatctgggacgatgtcttggagttcgcc
tcctacgccttcaacaagtcgcactctgccggttacgccattctcgttatgcagaccgcc
tggctcaaggcccacttcccgaaggagtacatggcctccgtcctctcctcctacatgggg
aagaccgataagatcgtgcactatgtctctgcctgtcgccacgagggcatcaacatccta
cctccggatatcaacgagtccggccgtgacttcaccgccaccaaggacggtatccgcttc
ggcttcgcgggcatccgcggcgtgggcgagtcagtgggcgagaccatcatggctgaacgt
acaaagagcggtcccttcaagacggtccacgacttcgtggaccgcgtggacgcctcacag
gcgaaccgccgcgtcgtcgaggcgctgatcaagagcggggccttcgatttcacgggctac
acgagaaaacagatgatgcacttcgtggacaagaacaatgcgcgcaacattatcgagtcc
gctgccaagcgccagagggaccgtgcccaggggcaagtctccttcttcgacctcttgggt
gacgtctcggattccggctttgaggataagatccccgcaccggacggtatcgagtgggat
cggcgtaccaagctcgcccaggagcatgaggtgcttggcatctacgtctccgaccaccca
ctgcgtccgtatgaatacgcgctctccaaggctcgggactacaagatctccgatatctca
gcgaccgaggatgccgtcgatccggtgagcggcgcgaccgtcgcccgacacgttatcccg
gacggcaaagtggtccggctggcgggcatgatgagcgggatcgataagaagaccaccaag
accggcaaggcaatggcaatcgtgcagcttgcggacatggaaggggagaccactgtcgtg
gtattcccgaagctctatgaaacgtgtcaggctgcgctgtgtggcgagatcgacgagcag
accggtgagactatcggcgatgtctttctgaaggttcggggcaagcttgagcgctccgat
cgcggcgaccagatcatcgcggagagcgtggagcctctgatcctcaacagtgagaccaat
acgccaaaggtgctggaggtcaatcttgcctctgatatgctcagcgcagggcacatggag
caactgggttccgtcttcaaccgctatcccggcctcgactacgtcgagcttaggattgag
ggagccaactcaggcgacctgacctgcttcgagctgccgactaaagtcgacgcgcacaac
atggtgttgatcgcggaagtcagcgacgtcgtgggtaagcacgggaaagtcgttgtagcc
taa
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integrated database retrieval system
