Atopobium sp. oral taxon 416: J4859_08530
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Entry
J4859_08530 CDS
T07170
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
atb
Atopobium sp. oral taxon 416
Pathway
atb03030
DNA replication
atb03430
Mismatch repair
atb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4859_08530 (holA)
03430 Mismatch repair
J4859_08530 (holA)
03440 Homologous recombination
J4859_08530 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atb03032
]
J4859_08530 (holA)
03400 DNA repair and recombination proteins [BR:
atb03400
]
J4859_08530 (holA)
Enzymes [BR:
atb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J4859_08530 (holA)
DNA replication proteins [BR:
atb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J4859_08530 (holA)
DNA repair and recombination proteins [BR:
atb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J4859_08530 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
DNA_pol3_delta2
Motif
Other DBs
NCBI-ProteinID:
QUC02105
LinkDB
All DBs
Position
1613825..1614808
Genome browser
AA seq
327 aa
AA seq
DB search
MLGNNEIKRSDTVSHLKKYVKDSLAAFNLDEMDARGDLEPQTLKTSLEALPVGDKYRLVI
VHDAQKLSSRVQKMLLDYLDNPNEGSVLLLDASVPCEEESRKKDAFVKSKLYSKIKKMGP
EATINCPTPKPWEMPKAVQTKLARKAKTTIDPDAAQELVKRLGTNMSLLSSELETLKNLA
QEPGHIRLQDVTDNVVRIVEPTPWDLADAMCERNLKKSLELLAQMKTSVGPGTIAYLTGR
VKELICAKSLEERGESSALASELHKQSWQVKNYTRWARKFSREELVAALKACAQTDRAIK
SGSDVRNTLITLLASICREPSQTTYNC
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
gtgttaggcaataacgagatcaagcgctctgatacagtgagccaccttaaaaaatatgtg
aaagactctcttgcagccttcaacctggacgagatggatgcccgtggcgatttggagccg
cagaccctcaagacgagcctcgaagcgctgccggtgggtgacaaatatcggttggtgatc
gtccacgacgcgcagaagctctcctcacgggtacagaagatgctccttgattatctcgat
aaccccaatgagggcagtgtcctgttgcttgacgcctcagttccctgtgaggaggagagc
cgtaagaaggatgcctttgtaaagtccaagctctacagcaaaatcaagaagatgggccct
gaggctactatcaattgtccgacaccgaagccttgggagatgccaaaggcggtccaaacc
aagttggcccgtaaggccaaaacaacgatcgatcccgatgcagcgcaggagctggtcaaa
cggctggggaccaatatgtcgctgttaagcagcgagcttgagacgcttaagaacctcgca
caggaaccgggccacatccgtctgcaggacgtcactgataatgtcgtgagaatcgtggaa
cccacgccgtgggatctggcggatgcgatgtgtgagcgcaatcttaagaagtcacttgag
ctgttggcgcagatgaagacctcagtgggaccgggaaccatagcctatctgacgggacgc
gtgaaagagctcatctgcgcaaagagcctggaggagcgcggtgagagtagcgctctggcc
agcgagctgcataagcagtcctggcaggtgaaaaactatacgcggtgggcacggaagttc
tcccgtgaggagctggtggcagccctgaaagcttgcgctcaaacagaccgcgcaatcaag
agcggatcagatgtccgcaataccctgatcactttgcttgcgagtatctgcagagaaccg
agccagactacctacaattgctaa
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