Atopobium sp. oral taxon 416: J4859_08600
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Entry
J4859_08600 CDS
T07170
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
atb
Atopobium sp. oral taxon 416
Pathway
atb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4859_08600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atb03019
]
J4859_08600
03016 Transfer RNA biogenesis [BR:
atb03016
]
J4859_08600
Enzymes [BR:
atb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
J4859_08600
Messenger RNA biogenesis [BR:
atb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
J4859_08600
Transfer RNA biogenesis [BR:
atb03016
]
Prokaryotic type
tRNA degradation factors
J4859_08600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH_N4BP1_2nd
KH-I_KHDC4-BBP
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QUC02118
LinkDB
All DBs
Position
1628359..1630602
Genome browser
AA seq
747 aa
AA seq
DB search
MKVTHEFDLYGKHYALETGELAKQATGAVLVKAGDSTVLVTAVVSKERKDYDFFPLTVDF
IERMYSVGRIPGGYLKREGRPSEKATLTARMIDRPLRPSFPEGFRNEVQIVAMPLVADQI
DPVDTICVMAASAALTVGGVPFEGPLACVRIGRNKETGEFIVNPTYAQRKNSDLDLELGG
SSTYISMLEAGADEISEDDMLAAMAFGQEAIAAFCEQEKIFFKKVQDANGPFPEHDYELD
GPIPEVHDRVFAHYDEMSAALRDVDKASRLEKVEALKDSITAEFTEDEQEEWSRAIPVEL
KGLEKHAMRRMVVETGERVDGRTATEVRPLMIKPDYLPRVHGSGLFQRGQTQVLSVCTLG
MLNEWQRLDTIEPVEGKRYIHHYNFPPYCTGETGRIGSPKRREIGHGNLAERALKPVIPS
AEEFPYTIRVVSDVMESNGSSSMASACGSTLALMDAGVPIKRPVSGVAMGLIQEEGKTVV
LTDIQGLEDFLGDMDFKVTGTTKGITAMQMDNKATGLTPEILRKALMRAHEGRMFILDAM
TDAIPAPREHLKPSAPQIISLHIPTDKIHDVIGSGGKVIRSIQEDTGATVDVEEDGTVLI
SGLNGAGEAAAERVEQIVKVPEVGEEYTGRVVGIQPFGAFVELLPGKDGLLHISRVAKGR
VGKVEDVLNIGDEVKVKVIDVDEHGKISLDRLDKPGTLHQARSGQSYDHREHEGHERCRH
TRHPGDNGHRTPEGRIHGHQPRRHHEA
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtaacccatgaattcgacctgtatggcaagcactacgcgctggagacaggagaa
ctggcgaaacaggcaaccggcgctgtgctcgtgaaggcgggggattcgaccgtactcgta
accgcggtcgtctcaaaggagcgcaaagactacgacttcttcccgctgaccgtcgatttc
atagagagaatgtactccgtgggcagaatccccggaggctatctgaagcgcgaaggacgc
ccgagtgagaaggcgacgctcacggcccgtatgatcgaccgtccgctgcgcccgtccttc
ccggaaggcttcagaaacgaagttcagatcgtggcaatgccgctcgttgcggatcagatc
gatccggttgacacgatctgcgtgatggccgcttctgcggcgctgaccgtcggtggcgtg
cccttcgagggaccgctggcctgcgtcagaatcggccgcaataaggagaccggcgagttt
atcgtgaacccgacctatgcgcagcgcaagaactccgatctcgatctcgagctcggtggc
tcttcgacctacatctccatgttggaggccggcgccgacgagatctctgaggacgatatg
ctggcagccatggccttcggccaggaagccatcgccgccttctgcgagcaggagaagatc
ttcttcaagaaggttcaagacgctaacggcccattcccggagcacgactatgagctcgac
gggccgattcccgaggtccacgaccgcgtctttgcccactacgacgagatgagcgccgca
ctcagagatgtcgacaaggcttcccgcctggagaaggtggaggcgctcaaggactccatc
actgcagagttcaccgaggacgagcaggaagagtggagccgggcaatcccggtcgaactc
aagggcctcgagaagcacgcaatgcgccgcatggtcgtcgagaccggcgagcgtgtcgat
ggccgtaccgcgactgaggtcagacctcttatgatcaagccggattacctgccgcgtgtc
cacggctccggcctctttcaacgtggtcagactcaggtgctctctgtctgtaccctgggc
atgctcaacgagtggcagcgcctcgacacgatcgagccggttgagggcaaacgctacatc
caccactacaacttcccgccgtactgcaccggtgagaccggccgtatcggttccccgaag
cgccgtgagatcggccatggcaacttggctgagcgcgcgctcaagccggttatcccctct
gcggaggagttcccgtatacgatccgcgtcgtttccgacgtaatggagtccaacggttcc
tcgtcgatggcatcggcctgcggctctacgctcgcactgatggacgccggtgtccccatt
aagcgcccggtctccggtgtcgctatgggtctcatccaagaagagggcaagaccgtcgtt
ttgaccgacatccagggtctcgaagacttcctgggcgacatggacttcaaggtcaccggc
accaccaagggtatcactgcgatgcagatggacaacaaggccaccggcctcacaccggag
atcctgcgtaaggcactgatgcgggcgcacgagggccgtatgttcatcctggacgcgatg
accgacgcaatcccggcaccgcgcgagcacttaaagcccagcgcgccgcagatcatcagc
ctgcacatcccaacggataagatccatgatgttatcggctccggcggcaaagtcatccgc
agcatccaggaggataccggcgctaccgtcgacgtcgaggaggacggcaccgtcctcatc
tctggcctcaatggagcgggggaggcagccgctgagcgtgtcgagcagatcgtgaaggtt
ccggaggtcggcgaagagtacaccggacgcgttgtgggcatccagcccttcggcgctttc
gttgagctgctcccgggcaaagacggcctgctgcacatctcccgcgttgctaagggtaga
gtcggtaaggttgaggacgtcctgaacatcggcgacgaggtcaaagttaaggtcatcgac
gttgacgagcacggcaagatcagcctggaccgtctggacaagcctgggactttgcaccaa
gcccgctccggccagagctatgatcatcgcgaacatgagggacatgagcgctgccgccac
acccgtcacccaggcgacaacggccaccgcacccctgaaggcaggatccacggccatcag
ccccgccgtcaccacgaggcgtaa
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