Aethina tumida (small hive beetle): 109594026
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Entry
109594026 CDS
T06105
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
atd
Aethina tumida (small hive beetle)
Pathway
atd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109594026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atd03019
]
109594026
03041 Spliceosome [BR:
atd03041
]
109594026
Messenger RNA biogenesis [BR:
atd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109594026
Spliceosome [BR:
atd03041
]
Complex B
Other components
Prp19-related factors
109594026
Complex C
109594026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
Mad3_BUB1_I
TPR_10
TPR_7
NRDE-2
RPN7
ARM_TT21_C
ARM_TT21
PPR
DHR-2_Lobe_A
TPR_1
Motif
Other DBs
NCBI-GeneID:
109594026
NCBI-ProteinID:
XP_019864746
LinkDB
All DBs
Position
4:complement(join(26704768..26707269,26707359..26707406))
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AA seq
849 aa
AA seq
DB search
MPIKNNDKEQPMEITFTDEDLPYEEEILRNPYSVKHWLRYIDHKKKAPKHGVNIIYERAL
KELPGSYKLWYNYLKTRRRQVKQRCITDPLYEEVNNAFERSLVFMHKMPRIWMDYCTFLT
DQCKITRTRKVFDRALRALPVTQHHRIWPLYLGFVKKHDIPETAVRVFRRYLKLAPENAE
EYVDYLTEIGRLDECSLVLAKIVNDENFISQRGKSKHQLWNELCELISKNPGEVRSLNVD
AIIRGGLRRYTDQLGHLWNSLANYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDAYAQ
FEELSLSKRMEEVAKLSNPTEDDDIDLELRLAHFEYLMERRLLLLNSVLLRQNPHNVQEW
HKRVQLYEGKPHEIINTYTEAVQTVDPKLAVGKLHTLWVEFAKFYESNGQVDDARLIFEK
ATLVPYVKVDDLANVWCEWAEMEIRNENYDDALKLMHKATVMPSRKVAYHDDTETVQARL
YKSLKVWSMYADLEESFGTFKSCKAVYDRIIDLKIATPQIIINYGVFLEENNYFEEAFRA
YEKGISLFKWPNVYDIWNTYLTKFLKRYGGTKLERARDLFEQCLENCPPQFAKTLYLLYA
KLEEEHGMARHAMSVYERSTNAVLPEEMFEVFNIYIKRAAEIYGLPKTRQIYEKAIEVLP
EDKTRDMCIRFADMETKLGEIDRARGIYAHCSQICDPRVTTDFWQIWKEFEVRHGNEDTM
REMLRIKRSVQAMYNTQVNMMSAQMLSSATSMSGTVADLAPGVKDGMRLLEAKAVEMSGS
AGGSRPGNIMFVRGETQGANKDKVVNSEEIDIDDDDDDEEEVEEEVPVEKQNIPSEVFGS
LKNNEQNDE
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgcctattaaaaataacgataaagagcaaccaatggaaattacatttactgatgaagat
ttaccctatgaagaggaaatattaaggaacccatattctgtaaaacattggcttaggtac
atagaccacaaaaagaaagccccaaagcatggagttaacattatttatgagcgagcattg
aaggagttaccaggttcatataagttatggtataactacttgaaaactagaagaagacaa
gttaaacaaaggtgtataacagatcctctttatgaagaagtaaacaacgcatttgagagg
tctttagtgtttatgcataaaatgcctaggatttggatggattattgtacatttttgact
gaccagtgtaaaattacaaggactagaaaagtgtttgatcgtgctttaagggctctacct
gttacacaacatcatagaatctggcccttatatttaggatttgtgaagaaacatgacatt
cctgagactgctgtgcgagtatttagaagatatttgaagcttgctcctgaaaatgcagag
gaatatgttgattatttaactgaaattggaaggctggatgaatgctcattagtgctagca
aaaatagtgaatgatgagaattttatctcacaacgtgggaagtccaaacatcaactgtgg
aatgagctttgtgaattaatttctaaaaatccaggggaagttcgatcacttaatgtggat
gccattattagaggtggactaagaaggtatacagaccaactaggacatttatggaattca
ttggccaactattatgtacgtagtggattgtttgatagagccagagacatttatgaagaa
gctatacaaactgtgacaactgttagagattttacccaggtatttgatgcttatgcacaa
tttgaagagttgagtctgagtaaaagaatggaagaagtcgcaaaattatctaaccccact
gaagatgatgatattgacttggaacttaggttggctcactttgaatatttaatggaaagg
cgtctgctcttattaaattccgttttacttagacaaaatcctcacaatgttcaggaatgg
cataaaagagttcaactgtatgaaggaaagcctcatgaaataatcaacacatacactgaa
gcagtacaaacagtagatcctaaattagcagtgggaaaacttcacacattgtgggtagaa
tttgctaaattttatgaaagtaatggtcaggtggatgatgcaagactaatttttgaaaaa
gcaactcttgttccatatgtaaaagtagatgatcttgctaatgtgtggtgtgagtgggcg
gaaatggagatccgcaacgagaactatgatgatgctctgaaactaatgcacaaagcaact
gtgatgccatctagaaaagtcgcctatcacgatgatactgaaactgttcaagccagactt
tataaatctttaaaagtttggtcaatgtatgctgatttggaggaaagtttcggcacattt
aaatcttgcaaagctgtctatgacagaattatagatttgaaaattgcaacgccacaaatt
ataattaattatggtgtatttttggaagaaaacaactattttgaagaagctttcagagct
tatgagaagggtatatccttattcaagtggccaaacgtttatgatatatggaatacatac
ttaacaaaatttttaaagcgttacggcggtacgaaattagaaagagcacgtgatttattc
gaacaatgtctagaaaactgcccgcctcagtttgccaagaccttatatttgctctatgcg
aaattagaggaggagcatggtatggccaggcatgccatgtctgtatatgaaaggtctacc
aatgctgttcttccagaagaaatgtttgaagtatttaacatttatatcaaacgagctgcc
gaaatatacggtctccctaaaacaagacagatttatgaaaaggcaattgaagttctacct
gaagataaaacaagagatatgtgcatccgttttgctgatatggagacgaaattaggagaa
attgatcgggctagaggcatttatgcgcattgtagccaaatatgtgatcccagagtgacc
actgacttctggcagatctggaaagagtttgaagtaagacatggcaatgaagataccatg
agggagatgttgaggatcaagagaagtgttcaagccatgtacaacacccaagttaacatg
atgtctgcacagatgttaagttctgctacaagcatgtcggggaccgtggcggatttggcg
ccgggtgttaaggatggtatgcgtcttttagaagccaaagcagtagaaatgtctgggtct
gcaggtggttcaagaccaggaaacatcatgtttgttcggggagaaacgcaaggcgcaaac
aaggacaaggtggtcaattctgaagaaattgatattgatgatgatgatgatgatgaagaa
gaagttgaagaagaggtgcctgtagaaaagcaaaatatcccctcagaggtgtttggtagt
cttaagaataatgaacaaaatgatgaatga
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