KEGG   Aethina tumida (small hive beetle): 109594206
Entry
109594206         CDS       T06105                                 
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
  KO
K15542  polyadenylation factor subunit 2
Organism
atd  Aethina tumida (small hive beetle)
Pathway
atd03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:atd00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    109594206
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atd03019]
    109594206
Messenger RNA biogenesis [BR:atd03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     109594206
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_WDR3_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_Gbeta EIF3I Beta-prop_IFT140_1st Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_EIPR1 eIF2A Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_TEP1_C Beta-prop_WDR35_TULP_N WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_HPS5 Beta-prop_DCAF4 PEP5_VPS11_N Beta-prop_SPT8 Beta-prop_WDR41 Beta-prop_WDR11_2nd Tricorn_2nd Beta-prop_ACSF4 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 109594206
NCBI-ProteinID: XP_019864966
LinkDB
Position
4:complement(join(11177214..11177950,11178006..11178131,11178187..11178387,11178440..11178460,11178545..11178756,11178822..11179055,11179108..11179234,11179693..11179790,11180542..11180693,11180754..11181023,11181476..11181651,11181703..11181802))
AA seq 817 aa
MDFAQPPPNMSVPPPGMPGGPNLSMPPPNMTGQGGYNNMNNRPGFRPFMNMSRPLPGALN
NMTLEDFDGKRLRKSVMRKTVDYNSAIIKELECRVWQRDYRDRRALQPDAMYYPDMMPPP
SYQDNPINCVTTRFVKTATNKMRCPIFCMAWTPEGRRLVTGASSGEFTLWNGLTFNFETI
LQAHDSPVRTMVWSHNDSWMVTGDHAGYVKYWQSNMNNVKMFQAHKEALRGISFSPSDTK
FVTCSDDGTLRIWDFLRYQEERVLRGHGADVKCVHWHPQKSLIISGSKDNQQPIKLWDPK
TGQSLATLHAHKSTVMDLKWNDNGNWLITASRDHLLKLFDLRNLSQEVQTFRGHKKEASS
VAWHPIHEGLFCSGGSDGAIMFWHVGADKEVGAIEQAHDSIVWTLAWHPLGHILCSGSND
HTSKFWTRNRPGDQMRDKYNLNTLPAGIDGLEDMDVDVNVGSNNEPSSIIPGMGPEDKVD
ITSIISDGNATIPGLDLDPLANANDDKPKAKKVPFSKPIPRNFQAQWNETDDGPGSINEV
LTQLVENTPGVVPLQKIAPNAIIVYGKLIPVEPGSKLEQAIADGPEALQKYIDSGEIEEL
HDVMPIKDDDEDYLNDPLDDEPNKAVTDLVTGVYPNDQDLRSNDMDMRFMSRDNEIRQMG
DMDFRVQDQDFRNNHDYDMRNDGGEEDYRYNSNSGDQDFRNFYEEEEYNEEYYDWQRNGN
NYDNSYRGGPPPGPNRNNFRNQPNYNRNDPNNGQQDWNKDFRGRGRGRGMPRGIMRGGRG
NPRGNPRGQRGMMRGGPNIRGDKGANRGQPGRGRFSM
NT seq 2454 nt   +upstreamnt  +downstreamnt
atggacttcgcacagccgcctccgaatatgagcgtgccgcctcctggcatgcccgggggt
cccaatttgtccatgcctccgccaaacatgaccggacaaggtggctacaacaatatgaat
aatcgaccaggatttaggccattcatgaacatgtcgaggcctctgcctggggctttgaac
aacatgacactggaggattttgatggcaagaggctaagaaagtctgttatgagaaagaca
gttgattataactcagcaataattaaggaactcgaatgtagagtatggcaaagggattac
cgtgaccgtagggcgttacaacccgatgccatgtactaccccgacatgatgccgccccca
agttaccaagacaacccgatcaactgcgtaaccacccgattcgtgaaaacggcgacgaat
aaaatgaggtgtcctatattttgcatggcctggacgccggaaggccgaaggttggtaacg
ggtgccagcagcggagaattcactttatggaacggtttaacgttcaattttgaaaccatt
ctgcaggcacacgacagtccggttcgtacaatggtgtggagtcacaacgacagctggatg
gtgaccggggaccatgcggggtacgtcaagtattggcagtccaacatgaacaacgtcaaa
atgttccaggcgcataaagaggccctccgtggcataagcttcagcccctcagacaccaag
tttgtaacatgttcggacgatggtactctcagaatttgggactttttacgatatcaagag
gagagagtactcagaggacacggtgccgatgtaaaatgcgtccactggcatccacaaaaa
tctcttatcatctctggcagcaaagacaatcaacaaccaattaaattatgggatccaaag
accgggcaatctttagcaacactgcatgcacacaagtcaaccgttatggatctcaaatgg
aacgacaacggaaattggttaataacggcttcgagggatcacttactgaagctgttcgat
ttgaggaatctaagtcaagaagtacaaacattcaggggccataagaaggaggcctctagc
gttgcctggcatcctattcacgaagggctgttctgcagtggtggatctgatggtgctatt
atgttttggcatgtaggtgctgacaaagaggtgggtgccattgaacaggcccatgatagt
atagtgtggacgttggcctggcatccattgggacacattttatgttccggatcaaacgat
cataccagtaaattttggacgaggaacagacctggtgatcaaatgagggacaagtacaat
ttgaacacgttaccagccggtattgatggattggaagacatggatgttgatgtcaatgtg
ggatcaaataatgagccttcctccattatacccggaatgggacctgaagataaagtggat
atcacgtcaattatttcggatggtaacgctaccatccccggcctggaccttgacccactt
gcgaacgccaacgacgataaaccaaaagcgaagaaagtaccgttcagtaaacccattcct
agaaatttccaggctcaatggaacgaaacagatgatgggccgggtagtataaatgaggtg
cttacacagttagtagagaacactcctggggttgtaccattgcaaaagattgcccccaat
gctattattgtatacggaaaactaatacctgttgagccgggttctaaactggaacaggct
atcgctgacggcccggaagctttacaaaagtatatagattcaggggaaatagaagaattg
cacgatgtaatgcccataaaggacgatgacgaagattatttaaacgatccattagacgat
gagcctaataaagcagttactgatttggttactggggtttatcctaatgatcaagatctg
aggagtaatgatatggacatgaggtttatgtccagggacaatgaaattagacaaatggga
gatatggatttcagggttcaagatcaggactttagaaacaatcacgattatgatatgagg
aacgacgggggagaggaagactaccggtacaattcaaattccggagatcaggacttcaga
aacttctatgaagaagaagaatacaatgaagagtactacgattggcagaggaacggaaac
aattacgataatagttaccgcggcgggcctcccccggggcccaacagaaacaacttccga
aaccaaccgaactataacaggaatgaccctaacaatgggcagcaagattggaataaggac
ttcagaggtcgaggtcgcggtaggggcatgcccagaggtatcatgagaggtggtaggggt
aacccaagaggtaatccaagaggacagagaggcatgatgaggggcggcccaaatattagg
ggagataaaggtgcaaaccgtggtcagcctggccgaggaagattttcgatgtaa

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