KEGG   Aethina tumida (small hive beetle): 109595820
Entry
109595820         CDS       T06105                                 
Name
(RefSeq) helicase SKI2W
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
atd  Aethina tumida (small hive beetle)
Pathway
atd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109595820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atd03019]
    109595820
Enzymes [BR:atd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     109595820
Messenger RNA biogenesis [BR:atd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     109595820
  mRNA degradation factors
   3'-5' decay
    Ski complex
     109595820
SSDB
Motif
Pfam: DSHCT Ski2_N DEAD MTR4_beta-barrel Helicase_C DEXQc_Suv3 ResIII MTR4-like_stalk ATPase_2
Other DBs
NCBI-GeneID: 109595820
NCBI-ProteinID: XP_019866804
LinkDB
Position
1:complement(join(63651336..63651569,63651652..63651786,63651838..63652470,63652994..63653308,63653361..63653588,63653643..63653921,63654073..63654469,63654524..63654798,63654855..63655429,63655553..63655711,63655762..63655975,63656139..63656318))
AA seq 1207 aa
MALNVVPILPDIGEELRNYIVCPDNLPIHQYENNQEFWPRTSNVEDLLSYESFALSTTLE
VRRDLFTGKINGLKEVEIQNVGASAKNSMSFNRAPAAPSDATRGNASYVPFLPGSFSLSQ
KNKNNDILLNEELLVVPPGFDRGLEFKSDGFTVIHDGSMEINGKSTSHFINLADIAQNEE
KNLQEMWKEATKASATEDASSNSNIPGEDDVLPKDTPIINISSMPPLNTPKSTEWAILLD
STQPVKDFKEKVPDMAIKYDFELDPFQKLAILQLEQHNHVFVAAHTSAGKTVVAEYAIAL
SQKHMTRSIYTSPIKALSNQKYRDFKKKFHDVGLITGDFQINPSACCLIMTTEILRTMLY
SGSDITRDLEYVIFDEVHYINDVERGHVWEQVLILLPAHVCVVLLSATVPNPIEFADWLG
RTHQRRVYVVCTYQRPVPLQHFLYTGRGGSTKDNRFMLLDGNTWIKGGMTKAKEALEVLQ
KPNAPYNMGSQMEKTLWHGLIDHLNRNKLLPVIVFTFSRKKCDINASNLSKLDLTDKSEK
AQIMMFFNKSVKCLKEPDREIPQILKMKDILMRGIGVHHSGILPIIKEIVEMLFQNGLIK
LLFATETFAMGVNMPARTVIFDSVRKHDGKELRDLEPAEYIQMAGRAGRRGLDKQGTVIL
LCKTFVPHEDSLKKMMIGKPNSLESKFKLTYGMVLSLLRVESLSVEGMMSRSFREADHQK
KMVDIKKDLENVENQLTELSRQQLSNYLQPLVKFYENASDYLKLRKEIISEVLTDSKLQK
VMTPGRILLITWKQHKNKLALLLNTIKSKTVMYKVLVLTDGNSTVSADPNKDDLWFHMLG
LADESVFLPMVSASHEVLTITPSDVFEISGKTIKIDTDIVLKDWDKRQIPRFRHDPPGQT
CLKAVQELQKISMQANEKKSMNNMGYLHFIDDLKVNKQELFYLLEDMYRMKIAMLDNIHS
TQIPNFEQQFAAVFTRKFLEEKKKDLEFHLSNASLILYPDYQKRIELLRRFRYVDVNNRV
QLKGRVACEMGMNELLITEIVLRNILTRLKSAEVAALLSALVFKVKMRNDTYEYEEKDLT
ENLRNGIAEVKKIHEEIGALEIQLNISTEEFQEDLNFGLVYVIYEWANSKPFAEIMMLTE
IQEGTIVRCIQQLNETICDIRDAAYIIGDPALHTKMDEASIAIKRDIVFAASLYTREDER
SSEKIIY
NT seq 3624 nt   +upstreamnt  +downstreamnt
atggcactaaacgttgtgcctatcttaccagatattggggaagaattacgaaattatatt
gtatgtccagataatttaccaattcaccaatatgaaaataatcaggagttttggcccaga
acttccaatgttgaggatttactgtcctatgaatcatttgctctatctactacattagag
gttcgtagagatctttttactggcaaaattaatggtttaaaagaagttgagatacaaaat
gttggagcttctgcaaaaaattccatgtctttcaaccgagcacctgctgctccttctgat
gcaacaagaggaaatgcttcttatgtaccatttctacctggcagtttctctctctctcaa
aaaaataaaaataacgacatacttttaaatgaagaattgttggttgtacctcctggtttt
gatagaggtttagagtttaaatcagatggtttcactgtaattcatgatggttctatggaa
atcaacggaaaatcgacatcacattttattaatttagctgatattgctcaaaatgaagag
aaaaatctccaagaaatgtggaaagaggcgacaaaagcatccgcaactgaagatgccagt
tctaattctaacataccaggggaagatgatgtccttcccaaggacacacctataatcaac
ataagctctatgccacctctcaacacccccaagagcacagaatgggctattctacttgat
agcacacaaccagtgaaagattttaaagaaaaagttcctgatatggcaataaaatatgac
tttgagttggatccatttcaaaaattggcaattttgcaactggaacagcacaatcatgtt
tttgtggctgcacacacttcagcaggcaagactgttgtggcggaatatgcgatagcactg
tcacaaaaacacatgacccgaagtatctatacgtcgcccattaaagctttgtctaatcaa
aaatatagagatttcaagaagaagtttcacgatgttggtttaataactggagactttcaa
ataaatcccagtgcatgctgcttaatcatgaccactgagatattgagaactatgctttat
tcaggaagtgatattacaagagatttagaatatgttatttttgatgaggttcattacata
aacgacgtagaacgtggtcatgtttgggaacaggttttaatcttgctaccagctcatgtg
tgtgttgtactactgagtgccactgttccaaaccctattgaatttgcagattggttagga
agaacacatcagcgacgagtctatgtcgtttgtacttatcagagaccagtacctctacaa
cactttctttacactggaaggggaggttctactaaagataatagatttatgctcttggat
ggtaacacatggatcaaaggagggatgaccaaggctaaggaagctttagaagtattgcaa
aaacccaatgcaccatacaacatgggttcccagatggagaaaacattgtggcatggtctt
attgatcatttgaatagaaataaactactacccgttattgtttttacgttctcacgtaaa
aagtgcgatattaacgctagtaatctgtcaaaattagatctaactgataaatctgaaaag
gcccaaattatgatgtttttcaacaaatctgtaaaatgcttaaaggaacctgacagggaa
attccccaaattttaaaaatgaaagacattttgatgaggggtataggagtccatcatagt
ggaattttgccaataataaaagaaatcgtcgaaatgttgtttcaaaatggtttaataaag
cttttatttgctacagaaacatttgcaatgggagtgaatatgcctgccagaacagtaatt
tttgactctgttaggaaacacgatggcaaagaactccgtgatttagaacctgcagaatat
attcaaatggcaggtagagctggtagaagaggcttagataaacagggtacagttatactg
ttatgtaaaacttttgtcccccatgaggacagtttaaaaaaaatgatgataggcaaacca
aattcgttagagagcaagtttaaactgacatatggaatggtattgagtttgttgagagtt
gaaagtttgagtgttgaaggaatgatgtctcgtagttttcgtgaagcagaccatcaaaag
aaaatggttgatataaaaaaagatttggaaaatgttgaaaatcaactaaccgaactttct
agacaacagctcagtaattatctacaacctttagtgaaattttatgaaaatgcgagcgat
tatctaaaattgcgcaaagaaataatctctgaggttctgactgattcgaaattacaaaaa
gtcatgacaccaggccgcattcttttaattacgtggaaacaacataagaataagcttgcc
cttctcttaaacacgattaagtccaaaactgtaatgtataaggttcttgtgttgactgat
ggaaactcaacagtaagtgctgatcctaacaaggacgacctttggtttcatatgttgggg
ttggctgatgagtcggtatttctacctatggtatcagctagtcatgaagtacttaccatt
actccatctgatgtgtttgagatatctggaaaaactataaagattgatactgacatagta
ttgaaagattgggataaaaggcagattccaagatttagacacgatccccctggacaaact
tgtttgaaagcagtgcaagaactgcagaaaatctctatgcaagctaatgagaaaaaatct
atgaataatatggggtatttgcatttcattgacgatttaaaggtgaataaacaggagttg
ttctaccttctggaagacatgtatcgcatgaaaattgcgatgttagataacattcatagc
acacaaattcccaattttgagcaacagtttgctgccgtatttacaaggaaattcttggaa
gaaaaaaagaaagatttagaatttcatttatctaacgctagtcttattctgtatccggat
tatcagaaaaggattgaactgttgagacgatttagatatgtagatgtaaataacagagtg
caactgaaaggacgtgtagcatgtgaaatgggaatgaatgaattgctaatcacagaaata
gtgctaagaaatattttgacgagattaaaatcagcagaagttgcagcattgctatctgct
cttgtttttaaagttaaaatgagaaatgacacatacgaatatgaagagaaggaccttaca
gagaatttgagaaatggtattgcagaagtgaaaaaaatacatgaagaaattggtgctttg
gagattcagttaaatatatcaactgaagagttccaagaagatttaaattttggccttgta
tatgttatttatgagtgggctaactcaaagccttttgcggaaataatgatgttgacagaa
atacaggaaggaactattgttagatgtatccaacaactaaatgaaactatctgtgatatt
agagacgccgcatacattataggagatcctgcattgcacactaaaatggatgaagcatca
attgcaattaagagagatattgtttttgctgcaagtctttacactcgtgaagatgaaaga
agcagcgaaaaaattatttattga

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