Aethina tumida (small hive beetle): 109596377
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Entry
109596377 CDS
T06105
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
atd
Aethina tumida (small hive beetle)
Pathway
atd03013
Nucleocytoplasmic transport
atd03015
mRNA surveillance pathway
atd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109596377
09122 Translation
03013 Nucleocytoplasmic transport
109596377
03015 mRNA surveillance pathway
109596377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atd03019
]
109596377
03041 Spliceosome [BR:
atd03041
]
109596377
Enzymes [BR:
atd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109596377
Messenger RNA biogenesis [BR:
atd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109596377
Spliceosome [BR:
atd03041
]
Complex C
Other components
EJC/TREX
109596377
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109596377
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
109596377
NCBI-ProteinID:
XP_019867478
LinkDB
All DBs
Position
4:complement(join(2032252..2032265,2032326..2032581,2032764..2032910,2033082..2033213,2034156..2034274,2034470..2034874,2035148..2035352))
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AA seq
425 aa
AA seq
DB search
MADADDLLDYEDEENTEQTATETAAAGETKKGVKGTYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTDDVVNVLVMCHT
RELAFQISKEYERFSKYMTNVKVGVFFGGLPIQKDEELLKNNCPHIVVGTPGRILALVRS
RKLNLKHLKHFILDECDKMLELLDMRKDVQEIYRNTPHGKQVMMFSATLRKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMA
LAQLLTEQNFPAIGIHRGMEQKERLSRYEQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITFVSEESDAKILNEVQDRFDVNITELPDEIDLSS
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgccgacgatcttttggactacgaagatgaggagaacaccgagcagaccgcg
accgaaacggcggccgccggcgaaacgaagaagggcgtcaagggtacctacgtatccatc
cacagctccggcttcagggacttccttctgaaacccgaaattctcagagccattgtggac
tgcggcttcgagcacccttctgaagttcaacatgagtgtatccctcaggcagtgcttggc
atggacattctgtgccaggccaagtctggtatgggtaagacggcggtgttcgtcctggcc
acgttgcagcagctcgaacccaccgacgacgtcgtcaacgtcctggtcatgtgccacaca
agggagctggcattccagatcagcaaggagtacgagcgtttcagcaagtacatgaccaac
gtcaaggtgggagtcttctttggcggtctgcccatccagaaggatgaagaactgttgaag
aacaactgtcctcacattgttgtcggcacccccggccgtattttggcactagtccgttcc
agaaagctgaatctgaagcatctcaagcactttatcttggatgagtgtgacaaaatgctg
gaactattagatatgagaaaggacgtacaagaaatctaccgtaacacgccgcatggaaag
caagtaatgatgttcagtgccacgctccgcaaagaaatccgccccgtctgcaagaagttt
atgcaagatcccatggaagtgtatgtggacgacgaggccaagctgacgttgcacggactg
caacagcactatgtcaaactaaaggagaatgagaagaacaaaaaactctttgagttgctt
gatgtgttagaattcaatcaagtggtgatattcgtaaaatcagtacaaagatgcatggca
ttggcccaactattgacagaacaaaacttccccgccataggaatccacagaggaatggaa
caaaaggagcgtctgtccagatatgaacagttcaaggacttccaaaagagaattttggtg
gccacaaacctgtttggtcgtggtatggatattgagagggtcaacatcgtcttcaattac
gacatgcctgaagattccgacacttaccttcacagggtggccagagctggacgttttggt
accaaaggtctggccatcactttcgtgtcagaagaaagtgacgccaaaatcttgaatgaa
gtacaagatagatttgatgtcaatattacggaactacctgatgaaattgatcttagttcc
tacattgaaggacggtaa
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