KEGG   Aethina tumida (small hive beetle): 109596441
Entry
109596441         CDS       T06105                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
atd  Aethina tumida (small hive beetle)
Pathway
atd03030  DNA replication
atd03410  Base excision repair
atd03420  Nucleotide excision repair
atd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:atd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109596441
   03410 Base excision repair
    109596441
   03420 Nucleotide excision repair
    109596441
   03430 Mismatch repair
    109596441
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:atd03032]
    109596441
   03400 DNA repair and recombination proteins [BR:atd03400]
    109596441
Enzymes [BR:atd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     109596441
    6.5.1.6  DNA ligase (ATP or NAD+)
     109596441
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     109596441
DNA replication proteins [BR:atd03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    109596441
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     109596441
DNA repair and recombination proteins [BR:atd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     109596441
   NER (nucleotide excision repair)
    Other NER factors
     109596441
   MMR (mismatch excision repair)
    Other MMR factors
     109596441
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme FERM_N_2
Other DBs
NCBI-GeneID: 109596441
NCBI-ProteinID: XP_049819176
LinkDB
Position
2:complement(join(1199869..1200042,1200098..1200295,1200350..1200802,1200861..1201266,1201319..1201587,1201644..1201867,1201922..1202094,1202144..1202243,1202302..1202661,1202717..1202742,1202801..1202866,1202998..1203054,1203111..1203127))
AA seq 840 aa
MQKSITSFFTPVGQKPNKKQEQENGIKETEKKTKRSRSSSDEEANESPPSKSKNNAKRTK
SMDASSPAKENININSSGKKKKKIAIIDSDSEEETVVKNEVKVEVKEEPITPVKVKEETS
PKCETKVKSEVKSPVNIKTEKKTPESNKKSSSKKEKASPKTKNSPKEEKKNVLNFGQTKK
VEKTDTNVYDPTLSKYDPIEHAIWKRGEKVPYMALSRTLEEIEVISARLKIVEILSNFFR
SVIVLTPEDLLASVYLCLNKLAPAYEGLELGVAETSLMKAIAQSTGRTVAQIKADSQTAG
DIGIVAEQSKSHQKMIFKPAPLTIRGVFDKLKEIANMTGHASQNKKVQKIQSMFVACQGS
EAKFLIRSLAGKLRIGLAEQSVLHALALACTTTPPGQDYPPEELNRAKTLGADAFKAEYD
KMCLILKTAYCECPNYDMIIAVILKDGLTALPEKCKLTPGIPLKPMLAHPTKGVQEVLQR
FDNMTFTCEWKYDGERAQIHIDEDKVHIFSRNQENNTSKYPDIISRLGKCRKETVKSCIL
DCESVAYDPEKKQILPFQILSTRKRKDATEADIKVQVCVFMFDLLYLNGESLIRRPFIER
RNLLREHFSEVEGEWSFATHMDTTKMEEVQEFLDESVKGNCEGLMVKTLEKDATYEIAKR
SHKWLKLKKDYLEGVGDTLDVVVIGGYLGKGKRTGTYGGFLLACYDKDNEEYQSICKIGT
GFNDDILVQHSEFLKNHVIPNPKTYYRYDPSLEPDHWFDAVQVWEIKCADLSLSPIHRAG
LGIVDPEKGISLRFPRFIRIRDDKGVEDATDSQQVAYMYSNQEQVKNQQGNNKFAEEDFY
NT seq 2523 nt   +upstreamnt  +downstreamnt
atgcagaaaagtataacatcatttttcactccagtaggtcaaaaacctaacaaaaaacaa
gaacaagaaaatggaattaaggagacagagaagaaaacaaagagaagtcgaagttcaagt
gatgaggaggctaatgagagccctcccagtaaatctaaaaataatgccaaaaggactaag
tctatggatgcatcgtcacctgcaaaggaaaatataaacattaattcatcagggaagaag
aaaaagaaaattgccataattgattctgactctgaagaagaaacagttgtgaaaaatgag
gtaaaagtagaagtaaaagaagaaccaataactccagttaaagtgaaagaggagacatcc
ccaaaatgtgaaacaaaagttaaaagtgaggtgaaatcaccagtaaatattaaaactgaa
aagaaaacaccagaaagtaataaaaaatcatcttccaaaaaggaaaaggcttcacctaaa
accaaaaacagtccaaaagaagagaagaaaaatgttcttaattttggccaaaccaaaaaa
gttgaaaagactgacacaaacgtatatgatccaacattatcaaaatacgacccaatagaa
cacgccatatggaaacgcggagaaaaggtaccatatatggcattgtccaggacgttggaa
gaaatcgaagtaatttcagccagactaaaaatcgtggaaatcctcagcaattttttcaga
tcagtcattgttttaactcctgaggacttattggccagcgtttatttgtgtttaaacaaa
ctggcaccagcttacgagggtctggagttgggggtggctgaaaccagtctaatgaaagcc
atagctcaatccacaggtcgtaccgtcgcccaaatcaaggccgactcccaaacggccggc
gacataggaatcgtcgccgaacaatccaaaagccatcaaaaaatgatcttcaaacccgcc
ccattgacaatccggggggttttcgacaagcttaaagaaattgccaacatgactggacac
gcttcacaaaacaagaaggtacaaaaaatccagtccatgttcgtggcttgtcaaggttca
gaggcgaaattcttgattagatcgttggctggtaaattacgtatcggcctggccgaacag
tcggtgctccacgcactggctttggcgtgcaccacaacacctcctggtcaagattatcct
cctgaagaattaaacagggctaaaaccttgggggcggatgccttcaaggcggaatacgac
aaaatgtgcctgatattaaagactgcctattgtgagtgccccaactacgacatgatcatc
gcagttatactaaaggacggcttaacagctctgccagagaagtgcaagctaacgccgggc
attccgctgaagccaatgttggcgcaccccaccaaaggtgtacaagaagtcctacaacgc
ttcgacaacatgacgttcacgtgcgagtggaagtacgacggtgaacgtgctcaaatccac
atcgacgaagataaggtgcacattttcagcaggaatcaggagaacaacacttccaagtat
ccggacattatttcccggttgggtaaatgcaggaaggagaccgtcaagtcgtgcattttg
gactgcgagtccgtggcctacgatccagagaagaagcagattctgcccttccagattttg
agcacacgtaaacgaaaagatgctacagaggcggacattaaagtacaggtgtgcgtcttc
atgtttgatttgctgtacctgaacggcgagtctttgattcgacgtcccttcattgaacgt
aggaacctactgagagagcacttcagtgaagtggaaggtgagtggagctttgccactcac
atggacacaaccaaaatggaggaggtgcaggagtttctagatgagagcgttaaaggcaac
tgcgagggtctgatggtgaagacgttggagaaagacgccacttacgaaattgccaaaagg
tcgcacaagtggctgaagctaaagaaagattatttagaaggtgttggcgacaccttggac
gttgttgtcattggagggtatttggggaaaggcaagaggactggaacgtacggcgggttt
ttactggcctgctacgacaaggataatgaggagtaccaaagtatttgcaaaattggaact
ggatttaatgatgacatactggtgcagcactcggagtttctaaagaaccatgtcataccg
aaccccaaaacgtactacaggtacgacccctcccttgaaccagaccattggttcgacgcg
gtccaagtctgggagatcaaatgtgccgacttgtccctgtcacctatccacagagctggc
ctcggaattgttgacccagagaagggaatttcgttgaggttcccccgtttcatccggatc
agggacgataaaggtgtggaagatgcgactgattcgcagcaagttgcgtacatgtattcg
aaccaggagcaagtcaaaaatcaacaaggaaacaacaaatttgccgaggaagatttttat
taa

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