Aethina tumida (small hive beetle): 109596628
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Entry
109596628 CDS
T06105
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
atd
Aethina tumida (small hive beetle)
Pathway
atd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109596628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atd03019
]
109596628
Enzymes [BR:
atd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109596628
Messenger RNA biogenesis [BR:
atd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109596628
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109596628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
LRR_Zer-1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
109596628
NCBI-ProteinID:
XP_019867756
LinkDB
All DBs
Position
3:complement(join(28070216..28070219,28070280..28070495,28070551..28070962,28071043..28071194,28071300..28071612,28071671..28071739,28163000..28163175,28165430..28165743))
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AA seq
551 aa
AA seq
DB search
MPRNIKDNKYENNGSNRRTHSYMSPEDQAAGKKSYWTELEITGTIRNLSPNLFTMTQLTA
LYLKNNCLHRLPADICQLVNLRNLDLSYNKLRSLPAELGELIHLRELQLCHNFLRILPYE
LGKLFNLMVLGLVGNPLNKDIMNIYSEPNGTQRLLTYMLDNLQVTTPQPPPRPWIPLARP
TTNRQTCIFTVMCYNVLCDKYATRQMYSYCPSWALNWDYRKKGIMDEIKHYGADIINLQE
VEMEQFYSFFLPELKRDGYNGIYSPKSRAKHMGETERKYVDGCAIFYRTSKFTLIKEHLV
EFNQLAMANADGLEHMLNRVMPKDNIGLAALLQTTEAAWENTPTDAPFVQQPILVCTAHI
HWDPEFCDVKLIQTMMLSNELKTILDESAQTLKSNDINVNDPSNIQLVLCGDFNSLPDSG
VIEFLSTGRVSQDHKDFKALSYKACLEKILSCEKPNEFTHSFKLASAYNDEIMPFTNYTF
DFKGIIDYIFYAKQTMTPLGLLGPLSSEWLTHNKVIGCPHPHIYSDHFPLLVELEMVPTI
SAPINGIIGHR
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgccacgcaatattaaagataacaaatatgagaacaatggctccaatagacgtacacat
tcgtacatgtcaccagaagaccaagcagcaggtaaaaaatcatattggacagaattggag
ataacagggactattcgcaacttgagtccaaacctgttcacaatgacacaactcacagct
ttatatctaaagaacaattgtcttcatcgactacctgctgatatatgtcagttggttaat
ttaaggaacttagatttgtcttacaataagctgcgctcgttgccagctgaactaggagaa
ctaatccatctcagggaattgcaattatgccacaatttccttagaatactgccgtacgag
ctcggcaaactgttcaatctgatggtcctggggttagtagggaatccgctcaacaaggac
attatgaacatatactccgagcccaatggcacccagaggctgttaacatatatgctggac
aacttacaagtaacaacccctcaaccaccacctcgaccgtggataccattagccagaccc
acaaccaatagacaaacttgtatatttactgtgatgtgttacaacgttctttgtgataag
tatgctacaagacaaatgtacagttactgtccaagctgggccttgaattgggattataga
aaaaaaggcatcatggacgaaattaagcactatggtgctgacataatcaatttacaagaa
gtggagatggagcagttctacagcttcttcctccctgagctcaaaagagatggatacaac
ggcatttattcgccaaagtcccgtgccaagcacatgggtgagacggaaagaaaatatgtg
gacggttgtgccatattctacagaacatctaagtttacgttaatcaaggaacacttagtt
gaatttaaccaactggccatggcaaatgcggacgggttagagcatatgttaaacagagta
atgcctaaagacaacattggtttagccgctctcttacaaactaccgaagctgcttgggag
aacacccccacagacgcaccattcgtccaacaaccaattctcgtgtgcaccgcacacatc
cattgggacccggagttctgcgatgtgaagcttatccaaacgatgatgctgagtaatgaa
ctgaaaactatattggacgaatcagcgcaaaccctgaaatctaacgacataaacgtgaat
gatcctagcaatattcagctggtgttgtgtggggatttcaattctttgccagattctgga
gtaattgagtttctgagcaccgggagggtgtcgcaggatcacaaggatttcaaggcgctg
agctacaaagcctgtctcgaaaaaatactgagttgcgagaaacccaacgagttcacgcac
tccttcaaactcgcatcggcgtacaatgacgaaatcatgccgtttactaattacacgttt
gatttcaagggcatcatagactacatattctatgcgaagcagacgatgactccgctggga
ttattgggaccgctgtcttctgaatggctcacacataacaaggtgataggttgtccacat
ccccatatctactcggatcatttcccgcttttggtagaactagagatggtgcccacgata
tcggcgccgatcaatggaattataggtcacaggtag
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