Aethina tumida (small hive beetle): 109598311
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Entry
109598311 CDS
T06105
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
atd
Aethina tumida (small hive beetle)
Pathway
atd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109598311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atd03019
]
109598311
Enzymes [BR:
atd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109598311
Messenger RNA biogenesis [BR:
atd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109598311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
109598311
NCBI-ProteinID:
XP_019869753
LinkDB
All DBs
Position
5:join(12598534..12598664,12598722..12598956,12599014..12599898,12599950..12600033,12600967..12601061,12605275..12605373,12605457..12605514)
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AA seq
528 aa
AA seq
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MCEITRNNFQEKLPEIKAAIDDAKFIAIDLEFSALTPLKNERYRLFDTPAERYAKLKRNI
EQVIPLQIGLTTFDFDPKTFKYVGTVYTFIVQPAAFPGLSTSYYFQTESIHFLTLFGFDF
NKFAFESIPYLRKDQVADLQRKISEDEIVDCFNFRHHIEDLFKNELDTVDVWYEKARNGE
SLSLPTIFQRYQGKQDIIYFLQKNLRTKYANLWTKTDSNEFKVFKMPPEEYYKREARNHL
ENELLDNLTGFTEVFECLVQAKKPIVGHNCLNDLMLLITSFHCELPNKYKDFKIMCNDLF
PIIFDTKHISYNLLKCAPGVSKFDNSLSTLYKFFNSNVADKLALNAPKITFISDCEGNYH
NAGWDSFCSGYIFIRMAYLNVYKQYPKTKKFVHSELLGGLIEYKNSINLIRGPINSIKLD
GEDPRSRRPPLLIVESTRKPINISQVASMLGNIGYVEIKKIPLKNNQALVAVDNYGNARR
ILESFRANDHFKIRQYNVFKHSPVIRVVVVGGIVISGAIIVWLIHSYQ
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgaaattactagaaataattttcaagagaaacttccagaaatcaaagcggcaatc
gacgacgcaaaatttatcgcaattgacttagaattcagcgccctgacaccgttaaaaaac
gaacgatacaggctttttgacacgccggcagaacgttacgcaaagttaaaacgcaacatc
gaacaagtaattccactacaaatcggcctgacaactttcgacttcgatcccaaaactttt
aaatatgtgggcactgtttacacatttattgtccaacctgccgccttccccggcctttcc
actagttattactttcaaactgagtcgatacatttcctgacacttttcggtttcgatttt
aacaagttcgcctttgaatcgataccgtatctcagaaaagatcaagtcgcagatctgcaa
aggaaaatttccgaagacgaaatcgtcgactgctttaattttagacatcacatagaagat
ttatttaaaaatgaacttgacactgtggatgtgtggtatgaaaaagcaagaaatggggag
agcctatccttacccacaatttttcaaaggtaccaaggaaaacaagacataatatatttt
ttacaaaaaaatctacgtaccaaatacgcaaatctgtggacgaagaccgatagtaacgaa
tttaaagtcttcaaaatgccaccagaagagtactataagcgggaagcgcgtaatcattta
gaaaacgaattattagacaacctgactggtttcactgaagtgtttgaatgccttgttcaa
gccaaaaagccaatagtgggccacaattgcctgaacgacctaatgttactcataaccagc
ttccactgtgaactgcctaacaaatacaaagactttaaaatcatgtgcaatgatttattt
cccataattttcgacacaaaacacatctcgtacaatttacttaagtgtgcaccgggagtc
agcaaatttgataacagcctgagcaccttgtacaaatttttcaacagcaatgtggctgat
aaacttgccctaaacgcccccaaaatcactttcattagtgattgcgagggtaactatcac
aatgctggttgggattcgttctgttccgggtatatctttattaggatggcctacttgaac
gtctacaaacaatatccaaagacaaagaagtttgttcactccgaattattgggtggactg
atcgagtacaaaaacagcattaatctcatcagggggccaattaatagtattaaattggac
ggagaggaccccagaagtaggcgaccaccgttactgattgttgaatccacgaggaaacca
atcaatatttcacaagtggcttccatgttgggcaacattgggtatgtggaaatcaagaag
atccccctgaaaaacaaccaggcgttagtcgcggtggacaattatggaaatgccaggagg
attttagagtcgtttcgtgcgaacgatcatttcaaaatacgacagtacaacgtgttcaaa
cattcgccagtgatcagagtggtcgtggtaggcggtatcgtaatttctggtgcaataatc
gtctggctcatacattcctatcaataa
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