Aethina tumida (small hive beetle): 109602483
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Entry
109602483 CDS
T06105
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
atd
Aethina tumida (small hive beetle)
Pathway
atd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109602483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atd03041
]
109602483
03009 Ribosome biogenesis [BR:
atd03009
]
109602483
Enzymes [BR:
atd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109602483
Spliceosome [BR:
atd03041
]
Complex A
U2 snRNP components
U2 related factors
109602483
Complex B
109602483
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
109602483
Ribosome biogenesis [BR:
atd03009
]
Eukaryotic type
90S particles
Helicases
109602483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
ATPase
ResIII
Myosin_head
Flavi_DEAD
TsaE
ABC_tran
AAA_30
AAA_25
Motif
Other DBs
NCBI-GeneID:
109602483
NCBI-ProteinID:
XP_019874409
EnsemblRapid:
ENSATDG00005005584
LinkDB
All DBs
Position
3:complement(join(36663652..36663779,36663849..36664011,36664074..36664264,36664324..36664446,36666635..36667719,36668391..36668798,36668850..36668899))
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AA seq
715 aa
AA seq
DB search
MSKRRIEVLDPFIKKKREERGISTAVTAPATTNASYNPYTGLPYTNKYHELFRKRISLPV
FEYKNEFMKQLADNQCIVLVGETGSGKTTQIPQWCVEYARSVGKKGVCCTQPRRVAAMSV
AQRVSEEMDVALGQEVGYSIRFEDCSSAKTILKYMTDGMLLREGMSDPMLDAYQCILLDE
AHERTLATDILMGVLKEVIKQRNDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEI
FYTPEPERDYLEAAIRTVIQIHMCEEIAGDILLFLTGQEEIEVACKRIKREIDNLGPEVG
ELKCIPLYSTLPPNLQQRIFEEPPPNKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGF
AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTKPGKCFRLYTEKAFKNEMQDNTYPE
ILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLGAV
MAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAKKAADDAKMRFAHID
GDHLTLLNVYHAFKQSMEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRTSTDFT
SKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSTCLDHKPEWVIYNEFVL
TTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEIIQTRLDSRQYQQGF
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgacgtatcgaagtgctcgatccattcatcaaaaagaaacgcgaggaacga
ggaataagtacggcagtcacagcaccggcaacaacaaatgcatcttataatccctatacg
ggacttccatacaccaacaaataccacgaactgttccgcaaacgtatttctctaccagtt
tttgaatacaagaatgagttcatgaaacaacttgctgataaccaatgtatagtattagtg
ggcgaaactggttcggggaaaacgacgcaaataccccaatggtgtgtagaatacgccaga
tctgttggcaaaaagggagtatgttgtacacagccaagaagagtggctgccatgtcggtg
gcacagagagtttcagaggaaatggatgtggccctgggacaggaagtgggttacagtatt
cgtttcgaggactgctcctcagcaaaaactattttaaaatacatgacagacggtatgtta
ctgcgtgaggggatgagcgatccaatgttagacgcctaccagtgtatactgctcgatgag
gcacacgaacgtaccctcgccaccgacatcctcatgggcgttctaaaagaggttatcaag
caacggaacgatctaaagctagttatcatgtcggccaccctagacgctggcaagttccag
cagtacttcgataatgcacctttaatgaatgtgcccggcagaacgcacccggtagaaata
ttttatacgcccgaaccggaacgagattacttggaggcggccatccgtacggtcatccag
attcacatgtgcgaggaaattgccggtgatatattgttgtttttgaccggtcaggaagaa
atcgaggtggcttgcaaacggatcaaacgggagatcgacaatctaggaccagaagttggt
gaattgaaatgtattccgttgtactccacacttccgccgaatctccaacagagaattttc
gaggaaccaccgccgaacaagcccaacggagccataggcagaaaagttgtcgtctcgacc
aacattgccgaaacgtccttgacaattgacggagtcgtattcgtgatcgatcccggtttc
gccaaacagaaggtatacaacccgcggatccgtgtcgagtctctcctcgtctcgccaatc
agcaaagcctccgcccaacagagggcgggtcgtgccggccgtaccaagccgggcaaatgt
ttccgcctctacaccgagaaggccttcaagaatgaaatgcaggacaacacttatccggaa
attctacgttcaaatctcggttccgtcgtgctacaattgaaaaaactcggcatcgatgat
ctcgtgcatttcgactttatggatccacccgcaccggaaacactgatgcgggcactcgaa
ctgctcaactatctggccgctctggacgacgacggcaatctgactgatttgggggcggtg
atggccgagttcccgctcgatccgcaactggccaaaatgctcatagccagctgcaaccac
aactgttccaacgaaattctctccattaccgctatgttatcagtcccgcagtgtttcgtc
cgaccaaacgaggcgaagaaggcggccgacgacgccaagatgcggttcgctcacatcgat
ggcgaccacttgactttgctcaacgtctatcacgcttttaaacaaagtatggaggatcct
caatggtgttacgataatttcgtgaactatcgttcactgaagtcggctgacaatgtacgt
caacaactctcaagaataatggataggttcaatctaaagcgaacttccacagatttcaca
agcaaagattactatataaacatccgaaaggcattggtgaacggcttcttcatgcaggtt
gcacacttagaaagaacaggacactatttgaccattaaggacaaccaaattgtacagctt
catccatccacttgtttagaccacaaacccgagtgggttatctataacgaattcgtttta
acaaccaaaaattatataagaacagtaacagatatcaaaccggattggttgttgaagata
gcacctcagtattatgatctccaaaacttcccacaatgcgaggccaaacgtcaactagag
atcatccagacacgattagactcgcgacagtatcagcaaggattttaa
DBGET
integrated database retrieval system
