Aethina tumida (small hive beetle): 109603563
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Entry
109603563 CDS
T06105
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
atd
Aethina tumida (small hive beetle)
Pathway
atd03022
Basal transcription factors
atd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109603563
09124 Replication and repair
03420 Nucleotide excision repair
109603563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atd03021
]
109603563
03400 DNA repair and recombination proteins [BR:
atd03400
]
109603563
Transcription machinery [BR:
atd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109603563
DNA repair and recombination proteins [BR:
atd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109603563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
BBL5
HTH_36
Motif
Other DBs
NCBI-GeneID:
109603563
NCBI-ProteinID:
XP_049825442
LinkDB
All DBs
Position
7:complement(join(977229..977345,977400..977575,977634..978020,978096..978352,978410..978611,978668..979006,979061..979214))
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AA seq
543 aa
AA seq
DB search
MSRSSEDVLLQIPQVRFKKGDGTLFLMDTRLIWMVENRDTVAVSHPYADIKSQKISPEGK
AKVQLQVVLHSGVSSTFHFINKNGQQAQVQDRDNVKEMLQSLLPKFKRKIDKELEEKNKV
LSSNPALLQLYKDLVMTDIVSSEEFWAQHAPQYTQKQKQPTQDIGVSGAFLADIKPQTDG
CNGLKYNITPDIIECIFKTYPAVKKKFAENVPTKLTEPQFWTKFFQSHYFHRDRKYAESK
DLFTECGKIDDQEMKKDIQSGVDDPLVNISGFEDKTYDAAYGVPNDKPNSLGTVSQAMIK
RFNQHSIMVLKATGAKTAEKTETATTSTSESTEVKSTEPPKKKQRILEKITYEDLDSEPK
NANKEPKLTLSKVERYLHGPMPDTAVENINPNEALNVLRGVVQETRQWNSRHNTSNLVSP
AAAVSALGELSPGGALMRGFQEHSLAQLVPADVEKEVRNLYLALCELLNHFWKCFPPTST
SMEQKCIKMHEALQRYQLAKLKPFEDKLIRDLSPLSHHLTLHLNQLLNMAYQKFTNWQKI
KSR
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagatcaagcgaagatgtgctactgcaaatcccgcaggttcgatttaaaaaagga
gacggtacattatttttgatggacaccaggttgatttggatggtggagaatcgcgatact
gttgcggtttcccatccctatgctgatatcaaatctcaaaaaatttcaccagaaggcaaa
gccaaagttcaattgcaagttgttttgcatagtggtgtttcatccacatttcacttcatt
aacaaaaatggacaacaagcacaagtacaagaccgcgataatgttaaagaaatgcttcag
tccttgctaccaaaatttaaaagaaagattgataaagaacttgaagagaaaaataaagtg
ttgtccagcaatcctgcattgttacagctgtacaaagatttggttatgactgacattgtc
tcttctgaggaattttgggcccaacatgccccacagtacacccaaaaacaaaaacaacca
acacaagacattggtgtttctggtgcgtttctggctgacatcaagccacaaactgatggc
tgcaatggactgaagtacaacataacaccagatattattgagtgcatatttaaaacatat
ccagcagttaagaagaagtttgctgaaaatgtcccaaccaaacttactgaaccacaattt
tggactaaattcttccaatcacattattttcacagggatagaaaatatgcagagagtaaa
gacttgttcacagaatgtggcaaaattgatgatcaggagatgaaaaaagacattcaaagt
ggagttgatgatcccttggtaaatatcagtggatttgaagataagacatatgatgctgct
tatggtgtaccaaatgataaaccaaacagtttgggcactgttagccaggctatgatcaaa
agattcaatcaacattctataatggtcctcaaggctactggagcaaaaacagctgagaag
acagaaactgcaactacaagcactagtgaaagcacagaagtaaaatccactgaacctcca
aagaaaaagcaaagaattttggaaaaaattacatatgaagatcttgatagtgagcctaag
aatgcaaataaggaaccaaaattgactctgtcaaaggtagaaagatatttacatggtccc
atgccagacactgcagtagagaatattaacccaaacgaagctttgaatgttttgcgcggc
gtggttcaggaaactcgtcagtggaacagcagacataatacaagtaatttagttagtcct
gctgctgcggttagcgctttaggggagttatcgccgggcggcgccctcatgagaggcttt
caagaacattctttagcacagcttgtacctgcagatgttgaaaaagaagttagaaatctg
tatttggcactttgtgaattgttaaatcacttttggaaatgttttcccccaactagtaca
agtatggaacaaaaatgtataaaaatgcatgaagcacttcagagatatcagttagcaaag
ttgaagccttttgaagataaattgattagagatttatcgccgttgtcgcatcatctgact
ctgcacctcaatcagttgcttaatatggcttaccaaaagtttactaattggcagaaaatt
aagagtcgttga
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