Aethina tumida (small hive beetle): 109605089
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Entry
109605089 CDS
T06105
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
atd
Aethina tumida (small hive beetle)
Brite
KEGG Orthology (KO) [BR:
atd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
atd03016
]
109605089
Enzymes [BR:
atd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
109605089
Transfer RNA biogenesis [BR:
atd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
109605089
Prokaryotic type
tRNA splicing ligases
109605089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
109605089
NCBI-ProteinID:
XP_019877215
LinkDB
All DBs
Position
5:complement(join(21101887..21102114,21102170..21102334,21102385..21102519,21102576..21102911,21102962..21103275,21103333..21103675))
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AA seq
506 aa
AA seq
DB search
MVVRQYQQELEYLEKINPYCWRIKKGFQPNMNVEGVFYVNQTLEKLMLEELRNACRPGMV
GGFLPGVKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGGVGFD
INCGVRLLRTNLFEKDVLPVKEQLAQGLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPAKVSTRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVEMEKAMKRDNIETNDRQLACARIN
SKEGQDYLKSMAAAANFAWVNRSSMTFLTRQAFAKQFNLAPDDLDMHVIYDVSHNIAKVE
QHIVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
LETFGSTCHGAGRALSRAKSRRNLDYTDVLKKLEESGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaagacagtatcaacaagagctcgagtatcttgaaaaaataaacccctattgc
tggcgcataaagaagggctttcaacccaacatgaacgtggagggtgtattttatgttaat
caaacccttgaaaaactgatgcttgaagagttaaggaatgcctgcagaccgggaatggtg
ggaggatttttaccgggcgttaaacaaattgctaatgtggctgctttgcctgggattgtt
ggcaaatctgttggtttgcccgatgtacattctggatatggttttgccattggtaacatg
gcagcctttgacatggatgatccgaaatctattgtgtcacctggtggtgtgggctttgac
ataaactgtggagtgagattattgagaacaaacttgtttgaaaaagatgtgttgccagta
aaggaacagttagctcaaggtttatttgaccacattccagtgggggtaggttccaaaggt
attataccaatgaatgctagggatttggaggaagcactggaaatgggaatggactggtca
ttaagagagggctacatttgggctgaggacaaagaacattgtgaagagtatggaagaatg
ttaaatgcagaccctgcaaaagtcagcacaagggcaaaaaagaggggtctacctcagctt
ggaacattgggggcaggcaaccactatgcagaaatccaagtggtggatgaaatttacgac
aaatgggctgcctgcaaaatgggtattgaagaaaagggtcagatttgcgtaatgatccat
tcgggtagtcgagggttcggccatcaggtggctacagacgctttagttgaaatggagaaa
gccatgaaacgcgacaacattgaaacaaatgatcgacaattagcttgtgctaggattaat
tcaaaagaaggacaggattatttgaaatcaatggctgctgctgccaatttcgcctgggtc
aacaggagttccatgacgtttttaactagacaagcatttgccaaacagtttaatttggct
cctgatgatcttgacatgcatgtaatttatgatgtttctcacaatattgccaaagttgag
cagcacattgttgatggtaaacaaaaaactttgttagtccacaggaagggttcgacgcgt
gcttttccacctcatcatcccttgatcccagttgattatcaattaacgggacagcctgtt
ttaattggtggtaccatgggtacttgtagttatgttttaactggaactgaacaaggaatg
ttggagacgttcggatcaacttgccatggagctggtcgtgctttgtcaagagcgaagtct
cgtagaaatttggactacacagatgtactaaagaagttggaggaaagtggcatatctatt
agagtggcatctcctaaattagtcatggaggaagctccagaatcttacaaaaacgttaca
gatgtagtaaacacctgtcatgctgctggtatcagtaaaaagtgcatcaaacttagacca
attgctgtgattaaaggttaa
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