Aethina tumida (small hive beetle): 109607634
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Entry
109607634 CDS
T06105
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
atd
Aethina tumida (small hive beetle)
Pathway
atd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109607634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atd03019
]
109607634
Enzymes [BR:
atd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
109607634
Messenger RNA biogenesis [BR:
atd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109607634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
GTP_EFTU
Cuticle_2
SRP54
AAA_16
ATP_bind_1
nSTAND3
SRPRB
Motif
Other DBs
NCBI-GeneID:
109607634
NCBI-ProteinID:
XP_019879670
LinkDB
All DBs
Position
1:complement(join(38945232..38945373,38945425..38945741,38945795..38945985,38946035..38946205,38946268..38946745))
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AA seq
432 aa
AA seq
DB search
MARDESHEFELEAGDELRFEVLAKTNDRVLVTVRIGMAEYFGADLVPGWSYDFASGAVVA
IYTKQGCVLEVEGKTSFMYVGKNTPMPLYCNFHTSLEFKRLNAITEHSYGPTVMVVGHAD
SGKTSLCRILLNYSVNNSHKPMFVDLDVMRGYIGPPGTIGASQVERKTQKDTDLFHKDPL
IYHYGHSCQQTNGTLYGMLITELARTVRLQRSVSDTVKSSGIIINTSSWTRGEGYAHLLH
TAKVFEVNIIIILDLERLYHELLRDVPNSVHLLSLPKSGGVVQRCFFDRLEESNRRLKEF
FYGTTECQISPQTIVLNWCDIRLYKIGCDTVPESCMPYGMKTIDHLTKLIAIEPSKKIEN
HLISVSPEHEDEHDIITKRSESIICVLSVDCENKTMTVLKPSEGPLTNNVLLLSDLEFLD
RRDLEEEMLMEI
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcgacgaatcgcacgaattcgagctcgaggcaggtgacgagctccgattcgag
gtgctcgcaaaaacgaacgaccgggtgctggtgacagtgcgaatcggcatggccgaatat
ttcggcgccgatcttgtcccagggtggtcgtacgacttcgcgagcggcgccgtggtggcc
atatacaccaagcagggctgcgtgctggaggtggagggaaaaacgtcgttcatgtacgtg
ggcaaaaacacgccgatgcccttgtactgcaacttccacacgagcctggaatttaagcga
ctgaatgccatcaccgagcatagctacgggcccaccgtcatggtggtgggccacgccgat
tcgggaaaaacctcactttgccgaatactactaaattattcagtgaacaattctcacaaa
cccatgtttgtggatttggatgtcatgagaggttacatcggtcctccaggaaccattgga
gcgtcacaagtagagaggaagacgcaaaaggacacggacttgttccacaaggatccactg
atttaccactacggacacagctgccaacaaaccaatggtaccttgtacggaatgttgata
acagagcttgcacgtacggtaaggctccagcgttcagtgagcgatactgtaaaatcgtcc
ggtattataattaacactagcagttggactcgcggagaaggttacgcacacctcttgcac
actgcaaaagttttcgaagtgaacatcattataatactagatctggaaaggttgtatcat
gaacttttaagagatgtacctaattccgttcatcttctttcacttccaaaaagtggtggt
gttgttcaaagatgctttttcgatagattggaagagagcaaccgccgactcaaggagttc
ttctacgggactacggaatgccagatcagtccgcaaacgatagtgctgaactggtgcgac
atcaggctttacaagatcggctgcgacacagttcctgaatcctgcatgccatatggaatg
aagacgatcgatcatctcacaaaattaatagcgatagaaccaagtaaaaaaatagaaaat
cacttgatatctgtttctcctgagcacgaagatgaacacgacataatcacgaagaggagt
gaaagcattatttgcgttttaagcgttgactgcgagaacaagacgatgaccgttttgaaa
ccttcggaggggccgctgacgaataatgttcttcttctttctgatttggaatttttggat
cgtcgtgatctagaagaagaaatgctcatggaaatttag
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