Arachidicoccus terrestris: K9M52_02380
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Entry
K9M52_02380 CDS
T08223
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
atee
Arachidicoccus terrestris
Pathway
atee03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
atee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K9M52_02380 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atee03400
]
K9M52_02380 (ligD)
Enzymes [BR:
atee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K9M52_02380 (ligD)
DNA repair and recombination proteins [BR:
atee03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K9M52_02380 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UAY55900
LinkDB
All DBs
Position
complement(602156..605047)
Genome browser
AA seq
963 aa
AA seq
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MPNKSLKKYAEKRHFDQTPEPKGGRSEGGKLHFVIQKHVASRLHYDFRLEMDGVLKSWAV
PKGPSLDPAIKRLAMQVEDHPYDYRNFEGIIPKGNYGAGTVIVWDEGTYEPIDGAAGKGK
KTMEKSLLAGLKSGDLKFRLHGQKLSGEFALVKTHGGNMAENAWLLIKHKDETVSKKDLT
RMDKSVVSGKTIAQMEKAPDRTYGKSTARTVAGSQKKTKQATGKATAADRKKSKGSKRQA
ATNDTATSDSLSDAEEADWRQMLGRLPDTPMPSNIDPMLATLVNAPFDDPDWNFEIKWDG
YRAIAYVEVTGKSKRKTTVHIKSRNQKDFEEKYYPIKGSLESVKEAMVLDGELVVVDKAG
MPQFGALQNWRSEADGALLYYVFDLLWYQGKDLRALPVFIRQIVLKAVMKTGDHSNIRLG
YSVQGEGKKFLASAASLGLEGMVAKKRDSIYETGHRSKFWLKVKVEQRQEAIIIGYTLNK
GSSKKFSSLLLGVYKDGTLQYAGKVGTGFSDKEQETLLRAFKPHIRKTSPLSTVPDIDKP
SRFRPSPPGSDVTWLHPRLIGEVSYRERTTDGLFRHPSFKGLRADKRPKDVVLEKESNTK
QLLKQTDRKMNPKKEAAKKTARKPSGKELSTKTTNKNMKDMLSVPAADPGEKTLLNPTEK
TQVKTVGGQQLQFTNLNKLYWKKEKIEKRALINYYYQIASFILPYLKGRPQSLNRFPDGI
TGQNFYQKDVTGKVPDWVSLYLYHSEGDKTDKHFLVADGLASLLYMASLGCIEMNPWSST
VKKPDNPTWCIIDLDPDKNKKGQKAFEEVITAALATRDVLEGLGVEGYPKTSGASGMHVY
IPLGNKYSYEQSKIFAKLIVSMVHERLPGFTTLERAVADRQGKMYLDFLQNRPQATIAAP
YSVRPKPGATVSMPLDWSEVKAGLKREDFTINNALARVREMGDLFKPVLGKGINLKKILS
QIE
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgccaaataaaagtcttaaaaagtatgcggaaaagcgccatttcgatcagacgcctgaa
cccaaaggaggcaggtccgaaggtggcaaattgcattttgtgatccaaaaacatgttgcc
tccaggctgcattatgactttcgcctggagatggatggcgttttgaaaagttgggccgta
ccgaaggggccttcgcttgacccggccataaaacgtctggcaatgcaggtagaggatcat
ccttatgactatagaaattttgagggaattatccctaaaggaaactacggcgccggtacc
gtcatcgtatgggacgaaggtacctatgagcctattgacggagctgccggaaaaggtaaa
aagacaatggagaaatctttgcttgccggacttaagtcaggtgatcttaaatttagactg
catggccagaagctttccggagaatttgcgctggttaagacccatggcggaaatatggct
gagaatgcctggctgctcattaaacataaagatgagaccgtcagcaaaaaggatcttacc
cggatggataaatcggttgtaagcggcaagacgatcgctcaaatggaaaaggcgccagac
aggacttatggaaaaagcacggctagaacagtggcgggttcccaaaagaagacaaagcag
gcgactggaaaagccacagcagcagaccggaagaaaagtaaaggaagtaaacggcaggct
gctacaaatgatacagcgaccagtgacagcttatctgacgcggaagaggcggactggaga
caaatgctcgggcggctgccggatacccccatgccttctaatatagatccgatgttggct
acactggtcaatgccccatttgacgatccagactggaattttgagatcaagtgggatgga
taccgggcgatcgcttatgtggaagttacgggcaaaagcaaacgcaaaacgaccgtccac
attaaaagtcgtaatcagaaagattttgaagagaagtattatcccattaaggggtcgctg
gaaagcgttaaggaggcgatggtgctggacggagagcttgtcgtcgtagacaaggctggc
atgccgcagttcggcgcgttgcagaactggcgcagtgaagcggacggcgctttgctttat
tatgtttttgaccttttatggtaccaagggaaggatttgcgggcgctccccgtttttatt
cggcagatcgttttaaaggcggtaatgaaaaccggcgatcattctaacatccgcctggga
tatagcgtccagggcgagggtaaaaaatttctcgccagcgcagccagcctcggactggaa
ggcatggtggcgaaaaaacgtgacagtatttacgaaacgggccaccggtctaaattctgg
ttgaaagttaaagtagaacaaaggcaggaagcgattatcattggttacacgctcaataaa
ggctcttcaaaaaagtttagttctttgctgctgggtgtctataaggacggaacgcttcag
tatgccggtaaagtgggtaccggatttagcgataaagaacaggaaaccctattgagggca
tttaagccacatatcagaaaaaccagtccattatccactgttccggatattgacaaacct
tcccggtttcgtcccagtccgcccggcagcgatgttacctggttacatcccaggcttata
ggggaggtgagctatcgtgaacggacaacggatgggttattccggcatccttcttttaaa
ggacttcgtgcggataagcgtccaaaggacgttgttttggaaaaagaaagcaacacaaag
caattactcaaacaaactgatcgtaaaatgaatcctaaaaaagaagccgcaaagaaaacc
gcacgcaaaccttcgggcaaggagctgtcaacaaaaacgaccaacaagaacatgaaggac
atgctgtctgtaccggcagcagacccgggagaaaaaaccttgctcaaccctacagaaaaa
acccaggtcaagaccgtgggcgggcaacaactgcagtttacgaacctgaataaattatat
tggaaaaaggaaaaaattgaaaagcgggcgctcatcaactactattatcagatcgcttcc
tttattctgccctatcttaaaggtaggcctcagtcactcaaccgttttccggatggaatc
acagggcagaatttctatcaaaaggatgtcaccggaaaagttcctgactgggtaagcctt
tacttgtaccatagtgagggagataaaacagacaaacattttttagtggcagacggtctg
gcttctttgttatatatggcctcactgggctgtattgaaatgaacccctggagtagtacg
gtgaagaaacctgataacccgacctggtgtatcatagatctggacccggacaaaaacaaa
aaggggcagaaggcatttgaagaagtcataacggctgctctcgcgacacgtgatgtatta
gagggcctgggcgtggagggatatccaaaaaccagtggcgccagcggcatgcatgtgtat
attccccttggcaataagtatagctacgaacaatccaagatattcgcgaaattgatcgtt
tctatggtccacgaacggcttccggggtttaccacattggaaagagcggtagccgacagg
caaggaaaaatgtacctggattttttgcaaaaccgtccgcaggcaactattgctgcgcct
tattcggtccgaccgaagccaggtgcaacggtatctatgcccttggattggtcggaagtg
aaagcaggacttaaaagggaagattttactataaacaacgcactggcaagagtacgggaa
atgggagacttgttcaagccggttctgggaaagggcatcaatcttaaaaagattctgagc
cagatagaataa
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