KEGG   Arachidicoccus terrestris: K9M52_02380
Entry
K9M52_02380       CDS       T08223                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
atee  Arachidicoccus terrestris
Pathway
atee03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:atee00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    K9M52_02380 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:atee03400]
    K9M52_02380 (ligD)
Enzymes [BR:atee01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     K9M52_02380 (ligD)
DNA repair and recombination proteins [BR:atee03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     K9M52_02380 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: UAY55900
LinkDB
Position
complement(602156..605047)
AA seq 963 aa
MPNKSLKKYAEKRHFDQTPEPKGGRSEGGKLHFVIQKHVASRLHYDFRLEMDGVLKSWAV
PKGPSLDPAIKRLAMQVEDHPYDYRNFEGIIPKGNYGAGTVIVWDEGTYEPIDGAAGKGK
KTMEKSLLAGLKSGDLKFRLHGQKLSGEFALVKTHGGNMAENAWLLIKHKDETVSKKDLT
RMDKSVVSGKTIAQMEKAPDRTYGKSTARTVAGSQKKTKQATGKATAADRKKSKGSKRQA
ATNDTATSDSLSDAEEADWRQMLGRLPDTPMPSNIDPMLATLVNAPFDDPDWNFEIKWDG
YRAIAYVEVTGKSKRKTTVHIKSRNQKDFEEKYYPIKGSLESVKEAMVLDGELVVVDKAG
MPQFGALQNWRSEADGALLYYVFDLLWYQGKDLRALPVFIRQIVLKAVMKTGDHSNIRLG
YSVQGEGKKFLASAASLGLEGMVAKKRDSIYETGHRSKFWLKVKVEQRQEAIIIGYTLNK
GSSKKFSSLLLGVYKDGTLQYAGKVGTGFSDKEQETLLRAFKPHIRKTSPLSTVPDIDKP
SRFRPSPPGSDVTWLHPRLIGEVSYRERTTDGLFRHPSFKGLRADKRPKDVVLEKESNTK
QLLKQTDRKMNPKKEAAKKTARKPSGKELSTKTTNKNMKDMLSVPAADPGEKTLLNPTEK
TQVKTVGGQQLQFTNLNKLYWKKEKIEKRALINYYYQIASFILPYLKGRPQSLNRFPDGI
TGQNFYQKDVTGKVPDWVSLYLYHSEGDKTDKHFLVADGLASLLYMASLGCIEMNPWSST
VKKPDNPTWCIIDLDPDKNKKGQKAFEEVITAALATRDVLEGLGVEGYPKTSGASGMHVY
IPLGNKYSYEQSKIFAKLIVSMVHERLPGFTTLERAVADRQGKMYLDFLQNRPQATIAAP
YSVRPKPGATVSMPLDWSEVKAGLKREDFTINNALARVREMGDLFKPVLGKGINLKKILS
QIE
NT seq 2892 nt   +upstreamnt  +downstreamnt
atgccaaataaaagtcttaaaaagtatgcggaaaagcgccatttcgatcagacgcctgaa
cccaaaggaggcaggtccgaaggtggcaaattgcattttgtgatccaaaaacatgttgcc
tccaggctgcattatgactttcgcctggagatggatggcgttttgaaaagttgggccgta
ccgaaggggccttcgcttgacccggccataaaacgtctggcaatgcaggtagaggatcat
ccttatgactatagaaattttgagggaattatccctaaaggaaactacggcgccggtacc
gtcatcgtatgggacgaaggtacctatgagcctattgacggagctgccggaaaaggtaaa
aagacaatggagaaatctttgcttgccggacttaagtcaggtgatcttaaatttagactg
catggccagaagctttccggagaatttgcgctggttaagacccatggcggaaatatggct
gagaatgcctggctgctcattaaacataaagatgagaccgtcagcaaaaaggatcttacc
cggatggataaatcggttgtaagcggcaagacgatcgctcaaatggaaaaggcgccagac
aggacttatggaaaaagcacggctagaacagtggcgggttcccaaaagaagacaaagcag
gcgactggaaaagccacagcagcagaccggaagaaaagtaaaggaagtaaacggcaggct
gctacaaatgatacagcgaccagtgacagcttatctgacgcggaagaggcggactggaga
caaatgctcgggcggctgccggatacccccatgccttctaatatagatccgatgttggct
acactggtcaatgccccatttgacgatccagactggaattttgagatcaagtgggatgga
taccgggcgatcgcttatgtggaagttacgggcaaaagcaaacgcaaaacgaccgtccac
attaaaagtcgtaatcagaaagattttgaagagaagtattatcccattaaggggtcgctg
gaaagcgttaaggaggcgatggtgctggacggagagcttgtcgtcgtagacaaggctggc
atgccgcagttcggcgcgttgcagaactggcgcagtgaagcggacggcgctttgctttat
tatgtttttgaccttttatggtaccaagggaaggatttgcgggcgctccccgtttttatt
cggcagatcgttttaaaggcggtaatgaaaaccggcgatcattctaacatccgcctggga
tatagcgtccagggcgagggtaaaaaatttctcgccagcgcagccagcctcggactggaa
ggcatggtggcgaaaaaacgtgacagtatttacgaaacgggccaccggtctaaattctgg
ttgaaagttaaagtagaacaaaggcaggaagcgattatcattggttacacgctcaataaa
ggctcttcaaaaaagtttagttctttgctgctgggtgtctataaggacggaacgcttcag
tatgccggtaaagtgggtaccggatttagcgataaagaacaggaaaccctattgagggca
tttaagccacatatcagaaaaaccagtccattatccactgttccggatattgacaaacct
tcccggtttcgtcccagtccgcccggcagcgatgttacctggttacatcccaggcttata
ggggaggtgagctatcgtgaacggacaacggatgggttattccggcatccttcttttaaa
ggacttcgtgcggataagcgtccaaaggacgttgttttggaaaaagaaagcaacacaaag
caattactcaaacaaactgatcgtaaaatgaatcctaaaaaagaagccgcaaagaaaacc
gcacgcaaaccttcgggcaaggagctgtcaacaaaaacgaccaacaagaacatgaaggac
atgctgtctgtaccggcagcagacccgggagaaaaaaccttgctcaaccctacagaaaaa
acccaggtcaagaccgtgggcgggcaacaactgcagtttacgaacctgaataaattatat
tggaaaaaggaaaaaattgaaaagcgggcgctcatcaactactattatcagatcgcttcc
tttattctgccctatcttaaaggtaggcctcagtcactcaaccgttttccggatggaatc
acagggcagaatttctatcaaaaggatgtcaccggaaaagttcctgactgggtaagcctt
tacttgtaccatagtgagggagataaaacagacaaacattttttagtggcagacggtctg
gcttctttgttatatatggcctcactgggctgtattgaaatgaacccctggagtagtacg
gtgaagaaacctgataacccgacctggtgtatcatagatctggacccggacaaaaacaaa
aaggggcagaaggcatttgaagaagtcataacggctgctctcgcgacacgtgatgtatta
gagggcctgggcgtggagggatatccaaaaaccagtggcgccagcggcatgcatgtgtat
attccccttggcaataagtatagctacgaacaatccaagatattcgcgaaattgatcgtt
tctatggtccacgaacggcttccggggtttaccacattggaaagagcggtagccgacagg
caaggaaaaatgtacctggattttttgcaaaaccgtccgcaggcaactattgctgcgcct
tattcggtccgaccgaagccaggtgcaacggtatctatgcccttggattggtcggaagtg
aaagcaggacttaaaagggaagattttactataaacaacgcactggcaagagtacgggaa
atgggagacttgttcaagccggttctgggaaagggcatcaatcttaaaaagattctgagc
cagatagaataa

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