Arachidicoccus terrestris: K9M52_03330
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Entry
K9M52_03330 CDS
T08223
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
atee
Arachidicoccus terrestris
Brite
KEGG Orthology (KO) [BR:
atee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
atee03009
]
K9M52_03330 (rlmD)
Enzymes [BR:
atee01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
K9M52_03330 (rlmD)
Ribosome biogenesis [BR:
atee03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
K9M52_03330 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Cons_hypoth95
Methyltransf_25
UPF0020
PrmA
Methyltransf_15
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
UAY56073
LinkDB
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Position
836565..837998
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AA seq
477 aa
AA seq
DB search
MRKKRPKIVLEDILALDYAAGGKAIGKNEGKVIFIENCIPGDRLDVQLTKNKKDWAEGFP
VRFKSYSTDRIQPFCDHFGICGGCAWQSLPYEKQLFYKRKQVQDNFERIGKLVFPEIAPI
IGCDQTTSYRNKMEYTYSTKKYISTEDMLAIKEAGQSFDPTADKGVAGFHAKGFFDRVVE
IDTCHLQAEPTNKIRKFIAQFARLRQLPFYDIAAHTGWIRTVQVRNTRGGDWMVNVVMGY
DAPEHREQLMALLQEKFPEITCLLYTINEKKNDSLYDLEPVVVKGDGYIIEQLERFRYKI
SPKSFFQTNSRQAETLYRVTREFAELSGGQTLYDLYCGTGSIGIFCSEGADSIIGVEVIE
DAITDARANAALNHLDNCHFYAGDVIKICDDDFFATHGRPDVIITDPPRAGMHEKLVQKL
LEIEAPLIVYVSCNPATQARDLALLSEKYEITRVQPVDMFPHTLHIENVVQLKLKTI
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtgagaaaaaaacgcccaaaaatcgttctggaagacatcctcgcccttgattatgccgct
ggcggcaaagccattggcaaaaatgagggtaaggtcattttcattgaaaactgcatcccc
ggtgaccggctggatgtacagctgactaaaaacaagaaggactgggccgaaggcttcccg
gtcaggttcaaaagctactctacggacaggatccagcctttttgtgaccattttgggatc
tgcggcggttgtgcctggcaatcacttccttatgagaagcaactcttttacaagagaaag
caggtacaagacaatttcgagcggatcggcaaactggtcttcccggaaattgcgcctatt
atcggctgtgaccagaccacttcttaccgcaataagatggaatatacctattccacaaaa
aaatatatctcgactgaggacatgctggccattaaagaagccggtcagtcttttgaccct
accgccgataaaggtgtggccggatttcatgcgaaaggattttttgaccgggtggtagag
atcgacacctgtcatctgcaggcggagcctaccaataagattcgtaaatttattgcccag
ttcgccaggctccggcaactgccgttttacgacatagcggcacacactggctggatcagg
accgtgcaggtcagaaacacccggggcggagactggatggttaatgtggtaatgggctat
gacgcaccggaacaccgggagcagttaatggctcttttacaggagaagtttccggaaatt
acctgtctgctctatacgatcaatgaaaagaaaaacgacagcctctatgatctggaaccc
gttgtcgttaaaggagatggttatatcatagaacagttagagcgttttaggtacaagatc
agccctaaatcatttttccagaccaattccagacaggcagaaaccctgtaccgggtgacc
cgggaatttgcggaactcagtggcggacagactttatatgatctgtactgcggtacaggc
agtattggcatattctgcagtgaaggggctgactctattatcggggtcgaagtcattgaa
gatgccatcacagatgccagggcaaacgcggcgctcaatcacctggataactgtcatttt
tatgcaggggatgtgattaagatctgcgacgatgattttttcgcgacacatgggcgtccg
gatgtcatcatcaccgatccgcccagggcaggcatgcatgagaaactggtacaaaagctt
ctggagatcgaggcgccgctgatcgtctatgtcagttgtaatcccgccacgcaggcccgg
gacctggccttactcagtgaaaaatacgagatcacccgggtacagcctgtggacatgttt
ccgcacacactacatattgaaaatgtagtgcaattaaaattaaaaacgatttaa
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