Acidovorax temperans: PQV96_05105
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Entry
PQV96_05105 CDS
T08827
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
atem
Acidovorax temperans
Pathway
atem02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
atem00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PQV96_05105 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atem03021
]
PQV96_05105 (rpoD)
Transcription machinery [BR:
atem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PQV96_05105 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
RasGAP
Motif
Other DBs
NCBI-ProteinID:
WCT25409
LinkDB
All DBs
Position
complement(1088424..1090781)
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AA seq
785 aa
AA seq
DB search
MPAQKSAKPPKTAPDTAAKAVSKTAAKAPAKAAATTKEVQTVYKSPAELKKAADELLKKK
PARAKAAPAAEEETSAAEAPKKKPGRPAKAAAAGGEAKAPAKRGRKPKAAAASDDVGDDA
DLSDIEADLEGEVEESTEAAATVEKVKPLRMKISKAKERALMKEFGLDETVLSEEDLQKR
RSRLKTLIKLGKTRGYLTHVEINDHLPDKLVDAETLEAVITTLNDLGVAVYEQTPDAEAL
IITDNAPAGATEEEAEEAAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK
RIEGGLMAMMEAISASPATIAEILNMGEEIREGKVVISTIVDGFSNPNEADDYVAEEDFD
EFDEADDDDGKGGSKALTKKLEELKKQALERFDKLRELFEKIHKIYDKEGYGTPAYMKAQ
AALSEELMTIRFTAKTIEKLCDMVRGQVDDVRKKERELRRIIVDKCGMPQETFIKEFPPN
LLNLQWVEKQAAAGKPWSAVMGRNIPPIQDLQQKLIDLQARVVVPLAELKGINKRMNEGE
ATSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST
YATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAAKMEI
PEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDGANTAPIEAAMQAGLRDVVKDILD
GLTPREAKVLRMRFGIEMTSDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRS
FIDSL
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctcaaaagtccgcgaagccgcccaagactgctccagacaccgccgccaaggct
gtctccaaaaccgctgccaaagcccccgccaaggccgcagcgaccacgaaagaagtccag
actgtgtacaaaagcccagccgagctgaaaaaagccgccgacgaactgctgaagaaaaag
cctgcgcgcgccaaggccgctcctgccgccgaagaggaaacctctgccgccgaagccccc
aagaaaaagcccggccgccctgccaaggcagccgctgctggtggcgaagccaaggccccc
gccaagcgtggccgcaagcccaaggccgcagctgccagcgatgacgtgggcgacgacgcc
gacctgtccgacatcgaagccgatctggaaggcgaagtcgaagagtccaccgaagcagca
gccacggtcgaaaaggtcaagccactgcgcatgaagatcagcaaggccaaggaacgcgcc
ttgatgaaggaattcggcctggacgaaaccgtcctgtccgaagaagacctgcaaaagcgc
cgctcgcgcctgaagacgctgatcaagctgggcaagacccgcggttacctcacgcacgta
gaaatcaacgaccacttgcccgacaagctggtcgatgccgaaaccctcgaagccgttatc
accaccctgaacgacctgggcgtggcggtgtacgagcagacccctgacgccgaagcgctg
atcatcacggacaacgcccccgccggcgccaccgaagaagaagccgaagaagctgcggaa
gccgcgctctcgaccgtggactcggaattcggccgcaccaccgacccggttcgcatgtac
atgcgcgaaatgggcacggtggaactgctgacccgcgaaggcgaaatcgaaatcgccaag
cgcatcgaaggcggcctgatggccatgatggaagcgatcagcgcatcgcccgccaccatc
gccgaaatcctgaacatgggcgaagagatccgcgaaggcaaggtcgtcatctcgaccatc
gtggacggtttctccaaccccaacgaggccgacgactatgtggccgaagaagacttcgac
gaattcgacgaagccgacgatgacgacggcaagggcggctccaaggcgctgaccaagaag
ctcgaagagctgaagaagcaggcgctggagcgctttgacaagctgcgcgagctgttcgag
aagatccacaagatctatgacaaggaaggctacggcaccccggcctacatgaaggcccag
gccgccctgtcggaagagctgatgaccatccgcttcaccgccaagaccatcgagaagctg
tgcgacatggtgcgcggccaggtggacgatgtgcgcaagaaggagcgtgagctgcgccgc
atcatcgtggacaagtgcggcatgccccaagagacgttcatcaaggaattccctcccaac
ctgctgaacctgcagtgggtcgagaagcaagccgccgctggcaagccctggtctgccgtg
atgggccgcaacattccgcccatccaggacctgcagcaaaagctgatcgacctgcaagcc
cgcgtggttgtgccactggccgagctcaaaggcatcaacaagcgcatgaacgaaggtgaa
gccacctcgcgcgatgccaagaaggaaatgatcgaggccaacctgcgcctcgtgatctcg
attgccaagaagtacaccaaccgtggcctgcagttcctcgacttgatccaggaaggcaac
atcggcctgatgaaggcggtggacaagttcgaataccgccgtggctacaagttctcgacc
tacgccacctggtggattcgccaggccatcacccgctcgatcgccgaccaggcgcgcacc
atccgtatcccggtgcacatgatcgagacgatcaacaagatgaaccgcatcagccgccag
cacttgcaagagtttggctttgagcccgatgcgtccatcctagcggccaagatggaaatc
cccgaggacaagatccgcaagatcatgaagatcgccaaggagccgatctccatggaaacg
ccgatcggggacgacgacgacagccacctgggcgacttcatcgaggacggtgccaacacc
gcccctatcgaagccgccatgcaggccggcctgcgcgatgtggtcaaggacatccttgat
ggcctgaccccccgcgaagccaaggtgctgcgcatgcgctttggtatcgaaatgaccagc
gaccacaccctggaagaagtgggcaagcagttcgacgtgacccgcgagcgcattcgccaa
atagaagccaaggcgctgcgcaagctcaagcacccctcgcgctcggacaagctgcgcagc
ttcatcgattcgctgtaa
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integrated database retrieval system
