Acidovorax temperans: PQV96_05735
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Entry
PQV96_05735 CDS
T08827
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
atem
Acidovorax temperans
Pathway
atem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQV96_05735 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atem03021
]
PQV96_05735 (rho)
03019 Messenger RNA biogenesis [BR:
atem03019
]
PQV96_05735 (rho)
Transcription machinery [BR:
atem03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PQV96_05735 (rho)
Messenger RNA biogenesis [BR:
atem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PQV96_05735 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
Spore_III_AA
S1CSD-TOTE-2
AAA
ResIII
Motif
Other DBs
NCBI-ProteinID:
WCT25520
LinkDB
All DBs
Position
complement(1226004..1227266)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEELEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDSVN
GGPPEQNKHKVMFENLTPLFPKEQMRLERDIKGDENITGRIIDIIAPIGRGQRALIVAPP
KSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGEIIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLNRRLYEKRVFPAIEL
NKSGTRREELLLAPEILQKTRILRQFMYNMDEIESMELMIKNMKATKTNVDFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacttaaacgaactcaaggcactgcacgtgtctgaagtcctgaagcaggccgaagaa
ctcgaaatcgaaaacacgggccgcatgcgcaagcaggagttgatgtttgcgatcatcaag
aagcgcgccaaggcgggtgagcaggtgtttgcggatggtgtgctggaaatcctgcccgac
ggttttggcttcttgcgcagccctgataccagcttcacggccagtacggacgacatctac
atcagccccagccaggtgcgccgcttcaacctgcacaccggcgacatgatcgaaggcgaa
gtgcgcacgcccaaggacggcgagcgctactttgccctgaccaagctggattcggtcaac
ggtggcccgccagagcagaacaagcacaaggtgatgttcgaaaacctgacgcccctgttc
cccaaggaacagatgcgcctggagcgcgacatcaagggcgacgagaacatcaccggccgc
atcatcgacatcatcgcgcccatcggccgcggccagcgcgcgctgatcgtggccccgccc
aagagcggcaagacggtgatgatgcagcacatcgcccacgccatcaccgccaacaacccc
gacgtgcacctgatggtgctgctggtggacgagcgccctgaagaagtgaccgaaatgcag
cgcacggtcaagggcgaaatcatcgcctcgaccttcgatgagcccgcggcccgtcacgtt
cacgtggctgaaatggtgatcgagcgcgccaagcgcctggtggagctgaagaaggacgtg
gtgatcctgctggactcgatcacccgcctggcccgcgcctacaacaacgtcgtgccgtcg
agcggcaaggtgctgtcgggcggtgtggacgccgctgctctgcagcgccccaagcgcttc
tttggcgcagcccgcaaggtggaagaaggcggctcgctcaccatcattgccacggcgctg
gtcgataccggcagccgcatggacgaagtgatctttgaagaattcaagggcactggcaat
tgcgaaatccacctgaaccgccgcctgtacgaaaagcgcgtgttccccgccatcgagctg
aacaagagcggcacacgccgcgaagagttgctgctggcgcccgagatcttgcagaagacc
cgcatcctgcgccagttcatgtacaacatggacgaaatcgagtcgatggagctgatgatc
aagaacatgaaggccacaaaaacgaatgtggacttcttcgacatgatgcgtcggggcggc
tga
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