Acidovorax temperans: PQV96_10985
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Entry
PQV96_10985 CDS
T08827
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
atem
Acidovorax temperans
Pathway
atem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PQV96_10985 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atem03400
]
PQV96_10985 (sbcB)
Enzymes [BR:
atem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PQV96_10985 (sbcB)
DNA repair and recombination proteins [BR:
atem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PQV96_10985 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PQV96_10985 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PQV96_10985 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WCT22650
LinkDB
All DBs
Position
complement(2321299..2322744)
Genome browser
AA seq
481 aa
AA seq
DB search
MASHTFLWHDYETFGANTRLDRPAQFAAIRTDAELNEIGEPLMIYCRPANDYLPDPQSCL
ITGITPQLCLEKGLPEREFANRIEAEFAQPGTIGVGYNTIRFDDEITRFMFWRNLIDPYA
REWQNQCGRWDLLDVVRMTYALRPDGITWPKKEDGSPSFKLEHLSKANGLVHEAAHDALS
DVRATIALARLIRQHNPKLFDFALALHKKDRVAAELRLPATALTARPFLHVSGMFPAERG
CLAVMWPLASHPTNKNELIAWDLAHDPRELATLNVDDIRLRLFTRAADLPEGVARLPIKT
IHLNKSPMVVGNVNTLTPALAQRWGIDLAQAAAHAEVARSLPDMSGIWPAVFARPQEPAP
DVDQDLYGGFVGNSDRHHLNDLRTMGGAKLATARTGFDDPRLTELVWRYRARNFPETLTP
EEQERWEAHRAACLFDGQGGARTVEQLFAQIDEISETADDERTQDILGALYDYAEHIAPE
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcacacctttctctggcacgactacgaaacctttggtgccaacacgcggctg
gatcgcccggcgcagtttgccgccatccgcaccgatgccgagctcaacgagatcggtgag
ccgctgatgatctactgccggcccgccaacgactacctgcccgatccgcagtcgtgcctc
atcaccggcatcaccccccagctgtgcctggaaaaaggcctgcccgagcgcgagtttgcg
aaccgcatcgaggccgagtttgcgcagcccggcaccatcggcgtgggctacaacaccatc
cggtttgacgatgaaatcacgcgcttcatgttctggcgcaacctcatcgacccctatgcg
cgcgaatggcagaaccagtgcggccggtgggacttgctggacgtggtgcgcatgacgtat
gcgctgcggcccgacggcatcacctggccgaaaaaggaagatggctcgcccagcttcaag
ctggaacacctctccaaagccaacggcctggtgcacgaggccgcgcacgatgcgctgtcg
gacgtgcgcgccaccattgcgctggcgcggctcattcgccagcacaaccccaagctgttt
gactttgccctggcgctgcacaaaaaggaccgcgtggcggccgagttgcgcctgcccgcc
acggcgctcacggcgcggccttttctgcatgtgtcgggcatgttcccggcagagcggggc
tgcctggcggtgatgtggccgctggccagccaccccaccaacaagaacgagctgattgcc
tgggacctggcgcatgacccgcgcgagctggcgaccttgaatgtggacgacattcgcctg
cgcttgttcacccgcgcggcagacctgcccgagggcgtggcgcgcctgcccatcaagacc
atccacctcaacaaatcccccatggtggtgggcaatgtgaatactcttacacccgcgttg
gcgcagcgctggggcattgacctggcccaggcggcagcgcatgcggaggtggcccgcagc
ctgccagatatgagcggcatctggcccgccgtgtttgcccgcccgcaagagcctgcgccc
gatgtggaccaggacctgtacggcggctttgtgggcaacagcgatcggcaccacctgaac
gacttgcgcaccatgggtggcgccaagctggccacggcccgcacggggtttgacgacccg
cgactgacggagctggtgtggcgctaccgggcccgcaacttcccggaaaccctcacgccc
gaagagcaggaacgctgggaagcccaccgcgctgcctgcctgtttgacgggcagggcggg
gcgcgcacggtggagcagttgtttgcgcagatcgacgagatctctgaaaccgctgacgat
gagcgcacgcaggacattttgggtgcgctgtacgattacgccgaacatatcgcgcccgag
cgctga
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