Acidovorax temperans: PQV96_11035
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Entry
PQV96_11035 CDS
T08827
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
atem
Acidovorax temperans
Pathway
atem03030
DNA replication
atem03430
Mismatch repair
atem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQV96_11035 (dnaE)
03430 Mismatch repair
PQV96_11035 (dnaE)
03440 Homologous recombination
PQV96_11035 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atem03032
]
PQV96_11035 (dnaE)
03400 DNA repair and recombination proteins [BR:
atem03400
]
PQV96_11035 (dnaE)
Enzymes [BR:
atem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PQV96_11035 (dnaE)
DNA replication proteins [BR:
atem03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PQV96_11035 (dnaE)
DNA repair and recombination proteins [BR:
atem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PQV96_11035 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
WCT26505
LinkDB
All DBs
Position
complement(2334000..2337536)
Genome browser
AA seq
1178 aa
AA seq
DB search
MYVHLRLHTEFSVVDGTTRIDEVVKAAAADGQPALAITDLNNLFGAIKFYKEGRGKGVKP
LLGAEIYLETEGGGDPSRMLVLVQNKQGYLNLSELLARAWTKNVVKNLAVCTWAWLQELS
EGLVALSGAQAGPVGQALLKGDEARAASLALRLAGIFPHRFYMELQRAGRADDESHVAAA
VQLAARLQLPVVATHPIQFLTADDYEAHEARVCIAGGEILANPRRVRRFTREQYFKSAQQ
MQELFADVPSALANTVEIAKRCSLTLVLGKPQLPAFPTPNGMPAEEYFRFASFEGLEERL
KHLYPDEARRDKERPRYVERLEFELGTILKMGFPGYFLIVGDFIQWAKNNGCPVGPGRGS
GAGSLVAYALKITDLDPLEYNLLFERFLNPERVSMPDFDIDFCQSNRDRVIDYVKEKYGK
NAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGMSYTLAYPPEVKKEGD
KNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCPLY
QQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIIKRHKGQENFAYENIPL
DDGPTYRLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPTFVN
RKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKKAE
EMAEHRAIFRKGAAEKGIDQDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKVHY
TAEFFCANMTVEMDDTDKLKVLYEDAVKNFGLSFESPDVNRGTYRFEPVTDKVIRYGLGA
IKGTGQQAIEAMVAAREGRGEGPQGSTKGPFKSLFDFCVRVDKARLNKRTLEALIKAGAF
DSINMNRAALVASIDRAFDFAAATLANVNQGGLFDMMGDDAHGSSTQEPDLVDAIPWGIK
ERLTQEKTAIGFYLSGHLFDEVASEVRKFVRTQIDELIDSREPQVLAGIVSDFRVINGQR
GKLGLFKIDDKSGMIEASADEALLNTYRNQLKEDEFVVVVGRLQMDHFSGGLRVKVQQVW
DLAGARCRFGKYLHIAMGNMQPDVKRLVSEFPPRREETEEGEILHGLRVRMGVRCQSDQG
GAVAELQLGEGSRFFPTDAALAAWSAQAGSGSATVVYE
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgtacgttcacttgcgcctgcacacagaattctccgtcgttgacggcaccactcgtatc
gatgaagtggtcaaagccgctgcggcagacgggcaacccgcccttgccatcactgatctc
aacaatctgttcggagccatcaagttctacaaggaagggcgtggcaagggcgtcaagcca
ttgctgggtgccgagatttaccttgaaaccgagggaggtggcgacccatcccggatgctg
gtgctggtgcagaacaagcagggttatctgaatctttcagaactgctcgccagggcatgg
acgaaaaacgtcgtcaaaaacctggcggtgtgcacttgggcatggctgcaagaactgtcc
gaaggcttggtggcgctttcgggcgcgcaggctgggcctgtggggcaagcgctgctcaaa
ggggatgaagcacgagctgccagcttggcgctgagactcgcgggcatctttccccatcgc
ttctacatggagcttcagcgtgctgggcgggctgacgacgagagccatgtggcggctgcc
gtgcaactggcggctaggctccagttgccggtggtggcgacccatcccatccagtttctg
acggctgatgactacgaggcacacgaagcgcgggtgtgcattgccggaggggaaatcctg
gccaaccctcgtcgcgtgcggcgtttcacccgagagcagtacttcaagtcggcgcagcag
atgcaagagttgtttgcagacgtgccctcagcgttagctaacaccgtagaaattgccaag
cgctgcagtttgacgctggtgctgggcaaaccgcagttgccggctttccctacgcccaac
ggcatgccggcggaggagtactttcgctttgcctcgtttgaaggtctggaagagcgcctc
aagcacttgtatccggacgaggcacggcgcgacaaagaacggccgcgttacgtagagcgc
ctggagtttgagttgggcaccatcctcaagatggggttccccgggtactttctcattgtg
ggtgacttcattcagtgggccaagaacaatggctgccctgtaggcccggggcgggggtcg
ggcgcgggttcgttggtggcgtacgccctcaagatcacggatttggacccgctggaatac
aacctgctgtttgagcgcttcttgaatcccgagcgggtttcgatgcccgacttcgatatc
gacttctgtcagtccaatcgcgaccgggtgattgactatgtgaaggaaaagtacggcaaa
aacgccgtcagtcagatcgccacttttggcaccatggctgccaaggcggcgattcgtgac
gtgggccgtgtcatggacatgagctacaccttctgcgacggcatctcgaagctggttccc
ggaaagccgggtatgtcgtacacgctggcgtatccgccggaagtgaagaaagaaggcgac
aagaacaactacgcgctcgagctggagcccatgctgtacgagcgtgtgcgcaaggaagaa
gacgtcaagaccgtgatcgagatggcacaaaagctcgaaggcatgacgcgaaacatcggg
atgcacgcgggcggtgtgctgattgctccgggcaagctcacagacttctgccccctgtac
cagcagcccggtagtgaatcggctgtgagccagtacgacaaggacgatgtggaagccatt
ggccttgtgaagtttgacttcttggggctggccacgctcaccatcctggagattgcgcgc
gaattcatcatcaagcgccacaagggccaggaaaacttcgcctacgaaaacataccgctg
gacgatggccccacttaccggctgttctctgacggcaaaacggaggctgtgttccagttt
gaaagccgaggcatgcagggcatgctcaaagaggcacgtccgagccgtctggaagatctg
atcgcgctgaacgcgctgtaccgcccagggccgatggacctgatccccaccttcgtgaac
cgcaagcacggaaaagagccggtggaatacccgcatccgctggtggaacccgtgctggcc
gagacctacgggatcatggtgtaccaagagcaggtgatgcagaccgcccaggttctgggt
ggctacagccttggcggcgccgacatgctgcgccgtgccatgggcaagaaaaaggccgaa
gaaatggccgagcatcgggccatcttccgcaagggagctgctgaaaaggggatcgatcaa
gacaaggcggacgaggtcttcgacttgatggagaagtttgcgggctacggcttcaacaag
tcgcacgcggctgcctattccttgctggcgtaccacaccggctggctcaaggtccattac
acggcggagtttttctgcgccaacatgacggtggaaatggacgacaccgacaagctcaag
gtgctctatgaagatgctgtcaaaaacttcgggctgagttttgagtcgcctgacgtcaac
cgtggcacctaccgtttcgagccggttaccgacaaggtcatacgctatggtttgggtgcg
atcaaaggcaccggtcagcaggcgatagaggcgatggtggctgcgcgcgaaggccgcggt
gaagggcctcagggttccaccaaaggccccttcaagagcttgttcgacttctgtgttcgc
gtggacaaggcgcggctgaacaagcgcacgctggaggccttgatcaaagccggggcgttt
gactccataaacatgaaccgtgccgcgctggtggcatccatcgaccgggcctttgacttt
gccgcagccactttggccaacgtgaaccagggcgggttgtttgacatgatgggcgacgac
gcccatggctcgagcacacaagagcccgacctggtagatgcgattccgtggggcatcaag
gagcgcctgacccaggagaaaaccgccattggtttttacttgtcaggccacctgtttgat
gaggtggcgtctgaagtgcgcaagtttgtccgcacgcagatcgacgagttgatcgacagc
cgcgaaccgcaggtactggcaggcatcgtgagcgatttccgggtgatcaacggtcagcgg
ggcaagctgggcttgttcaagattgacgacaagtcgggaatgatcgaagcctcagcggat
gaagcgctgctcaacacttaccgaaatcaactcaaggaagatgagtttgtggtggtggtg
gggcgcctgcagatggatcatttcagcggtggcttgcgggtcaaggtgcaacaggtgtgg
gacttggccggtgcgcgttgccgcttcggcaagtatctgcacatcgccatggggaatatg
cagcccgatgtgaagcgtctcgtgtcggagtttccgcctcgccgtgaagaaaccgaggag
ggtgaaatcctgcacggcctgcgcgtgcgcatgggcgtgcgctgccagtccgaccagggc
ggcgccgtggcagagctgcagctgggtgaagggagccggtttttcccgacggacgctgcg
ctggcggcatggagcgcgcaggctggaagcggctccgcaaccgtggtttacgagtga
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