Acidovorax temperans: PQV96_18880
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Entry
PQV96_18880 CDS
T08827
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
atem
Acidovorax temperans
Pathway
atem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
atem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PQV96_18880 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atem03021
]
PQV96_18880 (rpoC)
03400 DNA repair and recombination proteins [BR:
atem03400
]
PQV96_18880 (rpoC)
Enzymes [BR:
atem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PQV96_18880 (rpoC)
Transcription machinery [BR:
atem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PQV96_18880 (rpoC)
DNA repair and recombination proteins [BR:
atem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PQV96_18880 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WCT24100
LinkDB
All DBs
Position
complement(4036566..4040798)
Genome browser
AA seq
1410 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDYDAKRKEYGDEFIAKM
GAEGIKDLLESIDIDLSIEKLRGDLTGSEVKVKKNAKRLKVLEAFKKSGIKPEWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYATRDRINGKGEGLVFADTGEVQRALDAGEV
ELAARITVRMTEWTKDKETGEFVPSTSLVETTVGRALLSEILPKGLPFSYMNKALKKKEI
SRLINVSFRKCGLKETVVFADKLLQNGFRLATRAGISICIDDMLVPPQKASIIERSEKDV
KEIAQQYASGLVTSGERYNKVVDIWGKAGDEVSKVMMAQLSKQKVVDRHGKEVDQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEEDCGTANGSLMRAIVEGGEVIESLRDRILG
RTAAEDVLHPENRSVLVPAGTMLEEDLIEEIEAVGVDEVKVRTALTCETRYGLCAKCYGR
DLGRGGLINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGFN
ATMRYVSNTKGELVVIARSGEIIIQDEHGRERERHKVPYGATLTVKADQAIKAGTILANW
DPLTRPIITEFAGQVKFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLI
DAQGQEVKIPGTDHSVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTISFGKETKGKVRLQITDPEGKVWEELVPKEKNILVHEGQ
VVNKGESIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENVGESNYIAGEQVERSEILNTNEALQAEGKIPATYSNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKAKEAMDDAERRA
IAEAEAAEMAATADDSEVESSASASDAAAD
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaattcacgccggatgagcactttgacgccatc
cgcattggcatggcctcgcccgagaagatccgttcgtggtctttcggtgaagtgaagaag
cccgaaaccatcaactaccgtacgttcaagcccgagcgcgacggcctgttctgcgccaag
atttttggtcccatcaaggactacgaatgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtcacacagaccaaggtgcgccgcgag
cgcatgggccacatcgatctggccgcgccttgcgcccacatctggttcctgaagtcgctg
ccatcgcgtctgggcctggtgctggacatgaccctgcgcgacatcgaacgcgtgctgtac
tttgaagcctacgtggtgaccgaccccggcatgaccccgctgaagaagttcagcatcatg
tccgaggacgactacgacgccaagcgcaaggaatacggcgacgaattcatcgccaagatg
ggcgctgaaggcatcaaggacctgcttgaatccatcgacatcgacctgtcgatcgagaag
ctgcgcggcgacctgaccggctccgaagtcaaggtcaagaagaacgccaagcgcctgaag
gtgctcgaagcgttcaagaagtctggcatcaagcccgagtggatggtgctggaagtgctg
cccgtgctgcccccggacctgcgtccgctggtgccgctggacggcggccgtttcgccaca
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgtctgcgccgcctg
ctggagctgaaggcccctgaaatcatcgcccgcaacgaaaagcggatgctgcaagaggct
gtcgattcgctgttggacaacggccgccgtggcaaggccatgaccggcgccaacaagcgc
gcactgaagtccctggctgacatgatcaagggtaagtcgggccgcttccgccagaacttg
ctgggtaagcgcgtggactactccggtcgttccgtgattaccgtgggcccaacgctcaag
ctgcaccagtgcggtctgcccaagctgatggcgctggagctgttcaagccattcatcttc
tcgcgcctcgaagccatgggcatcgcgacgacgatcaaggccgccaagaaggaagtcgaa
tccggcacccccgtggtgtgggacattctggaagaggtcatcaaagagcaccccgtgatg
ctgaaccgtgcgcctacgctgcaccgtttgggtatccaggcctttgagcccatcctgatc
gaaggcaaggccatccagctgcaccccctcgtttgcgcggccttcaacgccgacttcgac
ggtgaccagatggctgttcacgtgccgctgtcggtggaagcgcagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttccccgcctcgggcgaaccctccatcgttcct
tcgcaggacgtggtgctgggcctgtactacgccacccgtgaccgtatcaacggcaagggc
gaaggcctggtgtttgctgacaccggtgaagtgcagcgcgctctggacgccggcgaagtg
gaactggccgcccggatcaccgtgcgcatgaccgagtggaccaaggacaaggaaacgggc
gaattcgtgccttcgacctcgctggtggaaaccaccgtgggccgtgcactgctgtccgag
atcctgcccaagggcctgccgttctcgtacatgaacaaggcgctcaagaagaaggaaatc
tcgcgcctgatcaacgtgtccttccgcaagtgcggtctgaaggaaacggtggtgttcgcc
gacaagctgctgcaaaacggtttccgtctggccacgcgcgctggtatctccatctgtatc
gacgacatgctggtgcctccacaaaaggccagcatcatcgagcgctccgaaaaggacgtg
aaagagattgcacagcagtacgcctccggtctggtgacttccggcgagcgctacaacaag
gtggtggacatctggggcaaggccggtgacgaagtctccaaggtgatgatggcccagctg
tccaagcagaaggtggtggatcgccacggcaaggaagtggaccaggagtccttcaactcc
atctacatgatggccgactccggcgcccgcggttctgcagcccagatccgtcaggtggct
ggtatgcgcggtctgatggccaagccagacggctcgatcattgaaacgcctatcaccgcg
aacttccgcgaaggtctgaacgtgttggagtacttcatctccacccacggtgcccgtaag
ggtctggccgacacggcgctgaagaccgctaactccggctacctcacccgccgtctggtg
gacgtgacgcaggacttggtcgtgaccgaagaggattgcggcactgccaatggttcgctg
atgcgcgccatcgttgaaggcggtgaagtgatcgaatcgctgcgcgaccgtattctgggc
cgcacggcagcggaagatgtgctgcaccccgaaaaccgctcggtgctggtgcctgccggc
acgatgctggaagaagacctgatcgaagagatcgaggctgtgggcgtggacgaagtcaag
gtgcgcacggcgctgacctgcgaaacccgctacggcctgtgcgccaagtgctacggccgc
gacttgggccgcggtggtttgatcaacctcggcgaagccgtgggtgtgatcgctgcccag
tccatcggtgaacccggcacgcagctgaccatgcgtaccttccacatcggtggtgccgct
tcgcgtgctgccatcgcttcgagcgtggaagccaagtccaacggcgtgatcggcttcaat
gccacgatgcgctacgtgagcaacaccaagggcgagctggtggtgattgcacgttcgggt
gaaatcatcatccaggacgagcatggccgcgagcgtgagcgccacaaggtgccttacggt
gcgacgctgaccgtgaaggccgaccaggccatcaaggccggcacgattctggccaactgg
gatccgctgacccgacccatcattaccgaattcgccggtcaggtgaagttcgagaacgtg
gaggaaggcctgacagtggccaagcaggtcgacgaagtgaccggcctgtccaccctggtg
gtgatcgaccccaagcgccgtggcgctgccaaggtcgttcgcccacaggtgaagctgatc
gacgcacaaggccaggaagtgaagatccccggcaccgaccactcggtgacgatcggcttc
caggtgggcgctctgatccaggtgcgcgacggccaggacgtgggccccggcgaagtgctg
gcccgtatccctgtcgaaggtcagaagacccgcgacattaccggcggtctgccccgtgtg
gccgagctgttcgaagcccgtacgccgaaggacaagggcacgctggcagaaatgaccggc
accatctccttcggtaaggaaaccaagggcaaggtccgtctgcagatcaccgaccccgaa
ggcaaggtgtgggaagaactcgtgcccaaggaaaagaacatcctggtgcacgaaggccag
gtggtcaacaagggcgaatcgattgtggacggccccgccgacccacaagacatcctgcgc
ctgttgggtatcgaagagctgtcgcgttacatcgtggacgaagtgcaggacgtgtaccgc
ttgcaaggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgtgtggtggtcgagaacgttggcgagtcgaactacattgccggtgaacaggtcgagcgc
tccgagatcctcaacaccaacgaggcactgcaggccgagggcaagatccccgcgacctac
agcaacttgctgctgggtatcacgaaggcctcgctgtcgaccgactcgttcatctcggcc
gcttccttccaggaaacgacccgcgtgctgaccgaagcggcgatcatgggcaagcgcgac
gagctgcgcggcctgaaggaaaacgtgatcgtgggtcgcctgattcctgccggtacgggt
ctggcctaccaccaggcgcgcaaggccaaggaagccatggacgacgccgagcgccgcgcc
attgccgaagcagaagccgccgaaatggccgcgactgccgacgactccgaggtggagagc
agcgcttcggcgtctgacgccgctgccgactaa
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