Actinia tenebrosa (Australian red waratah sea anemone): 116289174
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Entry
116289174 CDS
T07455
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aten
Actinia tenebrosa (Australian red waratah sea anemone)
Pathway
aten03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aten00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116289174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aten03019
]
116289174
03041 Spliceosome [BR:
aten03041
]
116289174
03009 Ribosome biogenesis [BR:
aten03009
]
116289174
03016 Transfer RNA biogenesis [BR:
aten03016
]
116289174
Enzymes [BR:
aten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116289174
Messenger RNA biogenesis [BR:
aten03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116289174
Spliceosome [BR:
aten03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116289174
Complex C
U4/U6.U5 tri-SnRNP related factors
116289174
Ribosome biogenesis [BR:
aten03009
]
Eukaryotic type
Pre-60S particles
Helicases
116289174
Transfer RNA biogenesis [BR:
aten03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116289174
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
TFIIF_alpha
AAA_22
Motif
Other DBs
NCBI-GeneID:
116289174
NCBI-ProteinID:
XP_031551910
UniProt:
A0A6P8HH67
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MADDLDDQDIFAVFEQEGQPEKLKKNALGREKSLTASSSEGKPQPGDKREVKEVLTDAIL
FDEEDIARPSTSNSNKKIKLEDTDSLLEAVPQVDVTTVETVEACTHEVAYPRGFEYTPLV
KKDSKPAKEYPFILDPFQKEALKCLENNQSVLVSAHTSAGKTVVAEYAIAMSLKNKQRVI
YTTPIKALSNQKYRELYEEFQDVGLMTGDVTINPSASALVMTTEILRSMLYRGSEVMREV
AWVVFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWITHLHKQPCHV
VYTDFRPTPLQHYVYPAGGDGLFLVVDEKGDFREENFNKAIAVIRDGSNDPGSMKGRRGG
TKGPSNTFKIVKMIMERNFQPVIIFSFSKKECEAYALQMSKLDFNTSQEKALVDEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFSEGLIKALFATETFAL
GLNMPARTVVFSSSRKFDGKDFRFITSGEYIQMSGRAGRRGLDERGIVILIIDEKMGPDV
GKGLLKGQADPLNSAFHLTYNMVLNLLRVEEINPEIMLEKSFYQFQNYAAIPNMVDKIKK
LEKKQEEFEIPNEESITAYYKIRQQLKKLADDMLTFIHQPKYCLPFMQPGRLVKIQNKEL
DFGWGVVLNFQKKANQKSGASIGDTLFVIEVLVKCSTRTIKSADGDIPQPCGVGEKGEMQ
VVPVLLNLVKRISSVRLYIPKDLRSLDSRQSVGKSVQEVIKRFPDGLPLLDPIEDMNIKE
DGLKKIIKKIEMLEHRMYTHPLHKDPSLDSLYSLCEEKAKIIADTKLAKKELKKAKTVLQ
LDELKCRKRVLRRLGYSTASDVIELKGRVACELSSGDELLLTEMIFNGVFNDLTTEQSVA
LLSCFICEERSDELPKLKEELAGPLRQMQESARRIAKVSQEAKMDLDIEEYVESFRPHIM
DVVFAWANGSSFAQICKMTDIFEGSIIRCMRRLEELLRQMCQASKAIGNTELENKFAEGI
IKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgatttagacgatcaagacatcttcgcagtttttgagcaggaaggccaacca
gagaaactaaaaaagaatgctttaggaagagagaaaagcctaacagcgtcttcttccgaa
gggaaaccacaacctggcgataaacgagaggtaaaggaagttctaaccgatgcaatactg
tttgatgaagaagacatagccaggccaagcacgagtaactccaataagaaaataaaacta
gaagacacagacagcttacttgaagctgttcctcaagtggatgtgacaactgtagaaaca
gttgaggcttgtactcatgaggttgcatatcctcgtggatttgaatacactccactagtg
aaaaaggactccaagccagcaaaggaatatccttttattctggatccatttcaaaaagaa
gcactaaaatgtttagaaaacaaccagtcagttttagtgtcagcacacacttctgctgga
aagactgttgttgcagagtatgccattgctatgtcactgaagaacaaacagagagtcata
tacactacccctataaaggccctgagcaaccaaaaataccgtgaattgtatgaagagttc
caggatgtagggttaatgactggagatgttactataaacccatctgcaagtgctcttgtt
atgacaactgagattttgagaagcatgttgtatagaggctctgaggtaatgagggaggtt
gcttgggttgtctttgatgaaattcattacatgagagacaaagagcgtggagttgtgtgg
gaagaaacaatcattctacttccagacaatgttcactatgttttcctatcagctactatt
cctaatgctcggcagtttgctgaatggattactcatcttcataaacaaccttgtcacgtg
gtttatacagactttcgtcctactccattgcaacattatgtctatccagcaggaggagat
ggattgtttttggttgttgatgaaaagggagattttcgtgaagagaactttaacaaagca
attgccgttattagagatggtagtaatgatccaggatcaatgaaagggagacgaggagga
acaaaaggtccatcaaatacctttaagattgtcaagatgatcatggaaagaaactttcaa
cctgtcattatctttagttttagcaaaaaagaatgtgaagcttatgcactacaaatgtct
aagctagactttaatacaagtcaggagaaagctttggttgatgaggtctttaataatgcc
attgattgcttgtcggatgaggacaaaaaactgccacaagttgaacatgttcttccatta
ttaaagcgaggcattggcatccatcattctggacttttaccaatcttaaaggaaacaatt
gaaatccttttctctgagggactcatcaaggcgctttttgctactgagacatttgctctt
ggccttaatatgcccgcaagaacagttgtcttttcaagctcaagaaagtttgatggaaaa
gattttagatttataacatcaggagagtatattcagatgagtgggcgtgcagggcgcaga
gggcttgacgaaagaggtatcgttattcttatcattgatgaaaaaatgggtcctgatgtt
ggaaaaggactgttgaagggccaagctgatcctcttaacagtgcttttcatcttacatac
aacatggtgttaaacctactgcgagtagaagagattaatccagagattatgttggagaag
tcattctatcagttccagaattatgctgccattcctaacatggttgataaaataaagaaa
ttggaaaaaaagcaagaggagtttgaaattcctaatgaagaatcaataactgcttattac
aagataagacagcagctaaagaaattggcagatgatatgttgactttcatccatcaaccc
aaatactgtctgcccttcatgcagccaggaagacttgttaagattcaaaataaagaacta
gactttggttggggtgtagtacttaattttcaaaagaaagcaaatcaaaagagtggtgcg
tcaattggagatacattgtttgtgattgaggttcttgtcaagtgctctacaaggaccatt
aaatctgcagatggtgatataccacagccctgtggggttggggaaaagggagaaatgcag
gttgtgcctgtgttattaaatttggttaaaagaatcagcagtgttcgtttgtatatacct
aaagatctgaggtcattagacagcagacaaagtgttggcaagtctgttcaggaggtcata
aagcgttttcctgatggcttgcctctgttagatcccattgaagacatgaatattaaagaa
gatggactgaagaagataataaagaaaattgaaatgctagagcaccgtatgtacacacat
ccgttgcacaaagatccatcattggattccttgtattcactgtgtgaagaaaaggcaaag
attattgctgataccaagctagcaaaaaaagaacttaaaaaagctaaaactgtactgcag
ttggatgaattgaagtgtcgaaaacgagtcttaagaagattaggatattcaactgcatca
gacgtcattgaacttaaaggtcgtgttgcatgtgaactgagcagtggtgatgagcttctc
ttaactgagatgatctttaatggtgtctttaacgacttgactacagaacaaagtgttgcg
ctattgagttgtttcatctgcgaagaacggagtgacgaactgcccaaattaaaagaagag
ttggctggacctctaagacagatgcaggaatcagcgcgtcgtattgccaaggtatcacaa
gaagccaagatggatttggatattgaggaatacgttgagtcattcagaccacatattatg
gatgttgtctttgcctgggctaatggctcatcctttgctcagatctgtaaaatgactgat
atatttgaaggcagtataataagatgtatgcgaagactggaggagcttttacggcaaatg
tgtcaagcttctaaagctattggtaacacagaactagaaaacaaattcgccgaaggtatt
atcaagatcaagcgagatatcgtgtttgctgcaagtctttacctctag
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integrated database retrieval system
