Actinia tenebrosa (Australian red waratah sea anemone): 116299947
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Entry
116299947 CDS
T07455
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aten
Actinia tenebrosa (Australian red waratah sea anemone)
Pathway
aten03013
Nucleocytoplasmic transport
aten03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aten00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116299947
03015 mRNA surveillance pathway
116299947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aten03019
]
116299947
Enzymes [BR:
aten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116299947
5.6.2.5 RNA 5'-3' helicase
116299947
Messenger RNA biogenesis [BR:
aten03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116299947
mRNA cycle factors
Common to processing body (P body) and stress granule
116299947
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
NPHP3_N
UvrD-helicase
Helicase_RecD
AAA_16
ATPase
nSTAND3
SRP54
AAA_22
TraI_hel_assoc_N
PhoH
Motif
Other DBs
NCBI-GeneID:
116299947
NCBI-ProteinID:
XP_031564537
UniProt:
A0A6P8IDS2
LinkDB
All DBs
Position
Unknown
AA seq
1116 aa
AA seq
DB search
MGTVDSYGPASQTLTFLDTEEADFGADTQGSEYEFHDFTVPSQTQTQSQPTDAEQNQTTL
LNGDIIKKKEIALEDTKDDTSKLTNSLGELNFEEDEDESFFPKDLPAHACSYCGIHDPAS
VVQCIQCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYNCTCRNVFL
LGFIPAKADSVVVLLCRQPCATQSSLKDMNWDQSQWQPLINDRCFLSWLVKVPPDEDQLR
ARQISAQQINKLEEVWKDNPEAKLEDLDKPGVDDEPQQVLLRYEDAYQYQNIFGPLVKLE
ADYDKRLKESQTQGDIVVRWDIGLNKKRLAFFTFPKTNDEMRLMPGDELRLRYLGELHKP
WQGVGHVVKVPNNFGEEVGIELRSNVGAPVECTHNFVVDFVWKSTSFDRMQAGMKTFAVD
ETSVSGYVYHKLLGHDVEEQMVKCQLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGP
PGTGKTVTSATIVYHLAKQNNGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAID
SPVAFLALHNQVRNNESVPELQKLQQLKDELGELSATDEKRYRSLKRNCERELLQNADVI
CTTCVGAGDPRLSKFRFRTVLIDESTQATEPECMVPVVLGCKQLILVGDHCQLGPVVMCK
KAANAGLSQSLFERLVVLGIRPIRLQVQYRMHPVLSEFPSNLFYDGTLQNGVTIAERLQT
GVDFPWPVPDKPMFFYATMGQEEIASSGTSYLNRTEAANVEKIVTRFLRAGIKPEQIGVI
TPYEGQRAYLVQYMQFSGSLHANLYMEVEVASVDAFQGREKDYIILSCVRSNEHQGIGFL
NDPRRLNVALTRAKYGIILIGNPKILSKQPLWNHLLNYYKENKALVEGPLNNLKESVIQF
SKPRKLVNRTNPGGRFMTTTMFDAREALIPGGVYDRQMPRMDHNAFHDQYYRTHDRLGYI
GAERAISPAAAASIPVPVGMFIPPVPSPHHSFFGQMSGRMPHGRVPQQQRPRGQRQQQGV
PYPVHIPASQASQDASQPLSQGPLTQGGMSAISQPLASQPLSQPDLSQDSYLGDDFNLKS
QADAVLSQDSTYQGDRGGYLNSQPDYASQPNYASQY
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagtcgattcttatggaccagcctcacaaaccttaacttttctagacacagaa
gaagcagattttggtgccgacactcagggaagtgaatacgagtttcacgactttaccgtc
ccttcacaaacccaaacacagtcacaaccaacagacgctgaacaaaaccaaacaactctc
ttgaatggagatataatcaagaagaaggaaattgcattggaagacacgaaggatgacact
tctaagctgacaaactctcttggagaactgaacttcgaagaagacgaagacgaaagtttc
tttcccaaagacttaccggctcacgcatgcagctattgtggcatccatgacccagcttca
gtggtgcagtgcattcagtgtagaaaatggttctgtaatggaagagggaatacttctgga
agtcatattattaaccaccttgtaagagctaaacacaaggaggttactctgcacaaagat
ggaccccttggagaaactgttctagaatgttacaactgcacttgccgcaatgtctttctt
cttggttttattcctgccaaagctgattctgttgtagtcttgctatgtcgacaaccatgt
gcgacacagagcagtctgaaagacatgaactgggatcaaagtcagtggcaacctctcatt
aatgaccgttgctttctgtcgtggctggtcaaagtacctccagatgaggatcaactcagg
gctagacagatttctgcccaacaaataaacaaactggaagaagtgtggaaggacaaccca
gaagccaagctagaagatctggacaagcctggggtagatgatgaacctcaacaggtcctc
ttgaggtacgaagatgcataccagtaccaaaacatctttggacctctggttaaactagaa
gctgactatgataaaagactcaaggaatcacagacgcaaggagatattgtggttcgttgg
gatataggattaaacaagaagaggcttgcattctttacattccccaagactaatgatgag
atgaggttgatgccaggtgacgagttacgcctgaggtacctaggtgaactacacaagcca
tggcagggtgttggacatgtcgtcaaggttcctaacaactttggtgaggaggttggtatc
gaattgcgaagcaatgttggagcccctgtggaatgtacacacaactttgttgtggatttt
gtatggaaatcgacatcatttgacaggatgcaggctggaatgaagacctttgcagtagat
gagacatctgtcagtggatatgtttatcacaagcttcttgggcatgatgtcgaggaacaa
atggttaaatgtcaacttcctaagaggttctctgcccctggtttaccagaactgaaccac
tcccaggtgtatgctgtcaagacagtattgcaaaggcctcttagcctcattcagggtccc
cctggtacaggaaagactgtgacctctgcaactattgtttatcatttggccaaacagaac
aatgggcaagtcctggtctgtgcaccaagtaatattgctgttgatcaacttacagagaaa
atccacaagacaggattaaaggtcgttcgtctttgtgctaagagccgtgaagccattgat
tccccagttgctttcctagctctccataatcaagtaagaaacaatgaaagtgttcctgaa
ctacaaaagcttcagcaactcaaggatgaactgggagaactgtcagccactgatgagaag
cgatatcgatctctaaagaggaactgtgaaagagagctccttcagaatgctgatgtgatt
tgtactacctgtgttggtgctggtgatccaagactgtccaagttccgtttcaggacagtt
ctaattgatgagtccacacaggctactgaaccagagtgcatggtaccagtcgtacttggt
tgcaaacagctcattcttgttggtgatcactgtcagcttggtcctgttgtgatgtgcaag
aaagcagccaatgctggactgtcacagtcattgtttgagaggcttgttgtgttaggtatt
agacccatacgtctgcaagtccagtaccgtatgcacccagtccttagtgagtttccatcc
aatctcttctatgatggaacacttcaaaatggagttactatcgctgaaagacttcagact
ggtgttgatttcccttggcctgtcccagacaaaccaatgttcttctacgcaacgatggga
caggaagagattgcttcatcaggaacatcatatctcaatagaactgaggctgcaaatgta
gagaagattgtcacaagattcttaagagccggtataaaaccagaacagattggtgtgatc
acaccctatgaaggacagagagcataccttgtacagtatatgcagtttagtggatcactt
catgctaatctatacatggaagtagaagtggcaagtgtggatgctttccaaggcagggaa
aaagattacatcattttatcatgtgtgcgttctaatgagcatcagggtattggttttctt
aatgatccacgtcgtttgaatgtggcattgacaagagctaagtatggaatcattctcatt
ggaaaccccaaaattctatccaagcaaccactgtggaaccatctactgaactactataaa
gaaaacaaagcccttgtggaaggtcctctgaataacttgaaggaaagtgtgatacagttc
agcaagcctagaaaactggtcaacagaactaatcctggaggacgattcatgacaactacc
atgtttgatgcccgtgaggctcttataccaggaggagtatatgacaggcagatgcccagg
atggatcataatgccttccatgaccaatattaccgtacccatgaccgtttaggatacatt
ggtgctgagagggccatctcacctgctgctgctgctagtattcctgttcctgtcggcatg
tttattccacctgtcccatctcctcaccactccttctttggacagatgtcaggaaggatg
ccacatggccgtgttcctcaacaacaaagacccagagggcagcgtcagcagcaaggtgtt
ccatacccagtgcatatacctgctagccaagccagtcaggatgcctcccagcctctgtct
caaggtcctctgacccagggtggtatgtcagctatcagtcagcctttggcctcgcagccc
ttatcccagccagatctctcacaggatagttatctgggggatgacttcaacctcaagtcc
caggcagatgctgttctttctcaagactccacgtaccaaggagatagaggaggatatctg
aactctcaaccagattatgcctctcaaccaaactatgcctcccagtattga
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integrated database retrieval system
