Actinia tenebrosa (Australian red waratah sea anemone): 116304949
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Entry
116304949 CDS
T07455
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aten
Actinia tenebrosa (Australian red waratah sea anemone)
Pathway
aten03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aten00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116304949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aten03019
]
116304949
03041 Spliceosome [BR:
aten03041
]
116304949
Messenger RNA biogenesis [BR:
aten03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116304949
Spliceosome [BR:
aten03041
]
Complex B
Other components
Prp19-related factors
116304949
Complex C
116304949
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_2
TPR_8
ARM_TT21_C
ARM_TT21
TPR_12
NRDE-2
TPR_7
FAT
TPR_1
Motif
Other DBs
NCBI-GeneID:
116304949
NCBI-ProteinID:
XP_031570615
UniProt:
A0A6P8IXF7
LinkDB
All DBs
Position
Unknown
AA seq
853 aa
AA seq
DB search
MHESSSKSKTIIIEEDDLPYEEEIIRNPYSVKCWMRYIEHKSKAGSKTANNMVYERALKE
LPGSYKLWYNYLKLRRKQVKGKPLTDPAYEDVNNAFERSLVFMHKMPRIWLDYCQFLVDQ
CKITKTRRVFDRALRALPITQHYRIWPLYLKFVRKHPIHETAVRVYRRYLKLQPENTEEY
VKYLVDVGWIDEAATRLATIVNKENFVSKEGKSNHQLWHDLCELISKNPTKIKSLKVADI
IRGGLHKFTDSLGQLWCLLADFYIRSGHFEKARDVYEEAIQTVMTVRDFGQVFDAYAQFE
ESMINAKMETTAEMGATEEEDIDLELRLARFENLMDRRPLLLSSVLLRQNPHNVHEWHKR
VKLYEGKPKEIINTFTEAVQTVDPKLATGKLHTIWIEFAKFYEKHNQINEARVIFDKATK
VNYRHVDDLASVWCEYAEMEIRHENYQRALELMRKGTSVPSTKTDYYDQGETVQKRVHKS
LKLWSMYADLEESLGTFQSTKAVYSRILDLRIANPQIIINYALFLEEHRYFEESFKVFER
GVAMFKWPNVFDIWNTYLSKFIRRYGGSKIERARDLFEQVLDGCPAKYAKTFYLMYAKLE
EDHGLARHAMAIYDRATKAVLPEEQFEMFNLYIKRAAEIFGVTHTREIFEQAIELLQDDQ
ARQMCIRFAELERKLGEIDRARAIYMHASQMSDPRRTSEFWKVWNEFEVRHGNEDTFREM
LRIKRSVQAQFNTQVNFMSAQMLAAAVGKGAGADEGDETTDEMRRLEQQVLAVAEQAKKE
ALQPKEKVLFVRGETTGDDNELAASKTTNPEEIDIDDDDDDEEDDSENQTKEIQIEKQAV
PSEVFGGLTKEDD
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgcacgagtcttcaagtaaatcgaagaccataataatcgaagaagatgaccttccttat
gaagaggagattattcgtaacccatattctgtcaaatgttggatgcgatatattgaacac
aagtcgaaagctggaagtaagactgctaataatatggtgtatgagagagcactcaaagag
cttcctggaagttacaaactctggtataattacttgaagctcagaagaaaacaagtcaag
ggaaaaccattgactgatccagcatatgaggatgtcaacaatgcttttgagagatcactc
gtttttatgcacaagatgcctcggatctggcttgattattgtcagtttctggttgatcaa
tgcaagatcacaaagacaagaagagtgtttgacagagcattacgagcacttccaatcacc
cagcactatagaatttggcctttatacctcaagtttgtgcgtaaacacccaatacatgag
acagcagtcagagtatacaggagatacctaaagcttcaacctgagaacacagaagaatat
gtgaaatatcttgtggatgttggatggatagatgaagcagccactaggctggctacaata
gttaacaaggaaaactttgtgtctaaagaagggaagtctaatcatcagttatggcatgat
ctatgtgagctgatttctaaaaacccaaccaaaatcaaaagtctcaaggttgcagacatc
atcagaggagggctgcacaaattcactgacagtcttggacagttgtggtgtttacttgct
gatttctacattcgaagtggacattttgaaaaggcaagggatgtttatgaagaggcaata
cagactgttatgactgtaagagattttggacaggtatttgatgcttatgctcagtttgaa
gagagtatgatcaatgccaagatggaaaccactgcagagatgggtgcaacagaagaagag
gatattgatttagaactcaggctggccaggtttgaaaatctcatggatagacgtccattg
cttctgagtagtgtcctcttgcgtcagaatccacacaatgtccatgaatggcacaagaga
gtcaaactttatgaaggcaaaccaaaagaaatcataaacacctttacagaagcagtacag
actgtggaccctaaattagcaactggtaaactgcatacaatatggatagaatttgccaag
ttctatgagaaacacaaccagataaatgaagcaagagtgatctttgacaaggcaactaaa
gtcaactaccgtcatgttgatgacttagccagtgtatggtgtgaatatgctgagatggag
ataagacatgaaaactaccagcgtgctttggagctgatgaggaaaggaacttcggttcca
tcgacaaagacagactactatgatcagggggaaactgtgcagaaacgtgtccataaatcc
ctcaaattgtggtctatgtatgctgatctagaggaaagccttggtacctttcagtctacc
aaggctgtttatagccgtattttagatttgagaatagctaatccacaaattataataaac
tacgccttattcttggaagaacatcgctactttgaagaaagttttaaggtttttgaacga
ggtgtggctatgttcaagtggccaaatgtgtttgacatttggaatacgtacctgagcaag
ttcattagacgatatggtggtagcaagattgaaagagcaagagatttatttgagcaggtt
cttgatggatgcccagcaaaatacgccaaaacattttatttaatgtatgctaagcttgaa
gaggaccatggtctagcacgtcatgctatggctatttacgaccgagcaaccaaggctgtg
cttcctgaagaacagtttgagatgttcaacctgtacatcaaaagagcagcagagatcttt
ggtgtgacacacacaagagaaatcttcgaacaagcaatcgaattgttgcaggatgaccaa
gctagacaaatgtgcatacgttttgctgaactggaaaggaagctgggtgaaattgaccgt
gcacgtgctatatacatgcatgcatcacagatgtcagacccaaggagaacttcggaattt
tggaaggtctggaacgagttcgaagttcgccatggaaacgaggatactttccgcgagatg
ttgcgaatcaaaagaagcgtacaggcccagttcaatacacaggttaatttcatgtctgcc
cagatgttggcagcagctgttggcaaaggcgcaggcgctgacgaaggagatgaaacgaca
gacgaaatgagacgacttgagcagcaggttttagccgtggcagagcaagcgaaaaaggaa
gctttgcaacccaaagaaaaagtgctttttgtaaggggagaaaccacaggagatgacaac
gaattagctgcgtcgaaaactactaatccagaagagatagatattgatgatgatgacgat
gatgaggaggatgatagtgaaaatcaaacgaaagaaattcaaattgaaaaacaagctgta
ccaagcgaggtttttggtggtttgacgaaagaggatgattga
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