Actinia tenebrosa (Australian red waratah sea anemone): 116307330
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Entry
116307330 CDS
T07455
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aten
Actinia tenebrosa (Australian red waratah sea anemone)
Brite
KEGG Orthology (KO) [BR:
aten00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aten03016
]
116307330
Enzymes [BR:
aten01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
116307330
Transfer RNA biogenesis [BR:
aten03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
116307330
Prokaryotic type
tRNA splicing ligases
116307330
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
116307330
NCBI-ProteinID:
XP_031573376
UniProt:
A0A6P8J0K6
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MPSRSFKEESEYLERISDXAYLIKKGFVPNMKVPGKFYINDALEKMMFDELRHWCGTDVG
GFLPGVKQIANVAALPGIVGHSIGLPDVHSGYGFAIGNMAAFDMSKPEAVVSPGGVGFDI
NCGVRLLRTNLDEKDVQPVKERLAQALFDHIPVGVGSKGVIPMGPKDLEEALEMGMDWSL
REGYAWAEDKEHCEEYGRMLQADTSKVSTKAKKRGLPQLGTLGAGNHYAEIQVVDKIFDE
FAAKKMGIDHTGQVCLMIHSGSRGLGHQVATDALVAMEKAMKRDKIEVNDRQLACAHIKS
QEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKIFKSTPDDLDMHVIYDVSHNIAKVEE
HFFEGKQTQLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTSSYVLTGTDKGMD
ETFGSTCHGAGRALSRAKSRRTFEYQDVLASLQQKGISIRVASPKLVVEEAPESYKDVTS
VVDTCHMAGISKKAIRLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgccttcacggtcttttaaggaagagagtgaatatctagagcgcatttctgattrtgca
tatcttatcaagaaagggttcgttccaaacatgaaggtgcctggtaaattctacataaat
gatgcactagaaaagatgatgtttgatgagctacggcattggtgtggcactgatgttgga
ggattccttcctggtgttaaacagattgctaatgttgctgctttaccaggaatagttggg
cattctattggtctaccagatgtgcattcaggatatggctttgctataggcaacatggct
gcatttgacatgtctaaaccagaagcagttgtctctccaggtggtgtagggtttgatatc
aattgtggtgttcgattgctgagaacaaaccttgatgaaaaagatgtccaaccagttaaa
gaaagactagctcaggctttatttgatcatattcctgtgggagttggttctaaaggagtc
attccaatgggaccaaaagacctagaggaggcrctagaaatgggtatggactggtcatta
agagaaggctacgcatgggcagaggataaagaacactgtgaggagtatgggagaatgtta
caagcagacacaagtaaagtcagcacgaaggccaagaagagaggactgccacagcttggc
actcttggcgctggaaatcattatgctgaaatacaagtagtagacaaaatatttgatgaa
tttgctgcgaagaaaatgggaatagaccacacaggacaggtatgtttaatgattcatagt
gggagcagaggtctgggccatcaggtagccacagatgcattagttgcgatggagaaagca
atgaagagagacaagattgaagtaaatgacagacagcttgcctgtgcccacatcaagtct
caagaaggacaagattacttaaaagccatggcagcggctgctaattttgcatgggttaat
cgttctagcatgacattcctctcaagacaggcatttgcaaagattttcaagagcacgcca
gatgatctggacatgcatgtcatctatgacgtgtcacacaacatcgcgaaagttgaggaa
catttctttgaaggaaagcaaacacagctacttgttcataggaagggatctacgagagca
ttccctcctcatcatcctttaatcccagttgattatcagctcacaggtcaaccagtactg
attggagggactatgggcacaagcagctatgttcttactgggactgataaagggatggat
gaaacatttgggtctacatgccatggggctgggcgagcactttctagagcaaaatctagg
aggacatttgagtatcaagatgtgctggccagtcttcaacagaagggcatctccatcaga
gtagcatcaccaaagcttgttgtggaagaggctccagagtcttacaaagatgttacgagc
gtggtcgacacttgtcatatggcaggaatcagtaagaaagctatccgattaaggccgatt
gctgttatcaaggggtga
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