Actinia tenebrosa (Australian red waratah sea anemone): 116308145
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Entry
116308145 CDS
T07455
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
aten
Actinia tenebrosa (Australian red waratah sea anemone)
Pathway
aten03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aten00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116308145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aten03019
]
116308145
Messenger RNA biogenesis [BR:
aten03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116308145
mRNA degradation factors
5'-3' decay
Decapping complex
116308145
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
MmeI_TRD
Motif
Other DBs
NCBI-GeneID:
116308145
NCBI-ProteinID:
XP_031574391
UniProt:
A0A6P8J345
LinkDB
All DBs
Position
Unknown
AA seq
811 aa
AA seq
DB search
MADSFFGFNTQIPSYEDEDLAVVDPSLANLEDDIDLLNDDTFGTGASVDDWEEAHRKLAG
LDLHGEDKPAWNDELSRKKLKADDDTNLEEEEEILEQCLAKLVDEDDLEEPNKAYAATGY
KDIPAPSVISSAWDGSSPLSSPTSSDSLHDLINPATNIWASPDHSQIFKETANATPKSVQ
SSDKKPNRRPYSPAFEVRGTDDAIIEALPKPTENLLPPSSFTKKVPTTAIRLEDLEKEFT
NESPHSMGQQETPRPSMIGRPPPGLPPPPMMRSPQVLHGYPPMPFPQHASQIYPRASSPG
PGLRPFPRTPQMFQNQQMYNKQPLPPGMGHRQGYPGTPPPRMQNQLFGKMRSDPAHLMRR
LGLPNQPRFSTPPSNYQNPNMRSPYPDNRYMNQRYNNYPKQHQQQQQQNQHQPTDLEKKI
HSILTADENLNNKDRYAGLMTRKEKEWIIKIQLLQLTSSNPNMDDYYFQTHESRKRAKER
AKRGEGVEFQYTGGQTQQMALPQFDREERHYKPLDFQNTLGKVSASHISHPREMVQVPNN
YKDLDQEKGTQGSSIKETRRRRRIMIVIDKAYDIQLQLDDLDSKLLESPAEQSNSIMEAK
QDKVDKLFQLLKLNAQDELSNNDAELIIQVMSVRKGKVLISRLLHYFKQAQAEAILQSIC
RNIVMVIKKDNQDELLPLLINPLGRVVDVATAEVVFRSLKYVVYGNNDPASPLSSVLANQ
FGIAVLSSLLKKANSSTFPSDNKEEYPKTWDAIVSQVAKEFSDVPVKLLAKNMSGVTPLV
TVLGSCDVAYDKSSLQEHYRLALSTREELKS
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcattttttggattcaacactcagataccctcttatgaggacgaggattta
gccgttgttgacccgagtttagcgaatttggaagatgacatcgacctcttgaatgatgat
acatttggaactggtgcttcggtggatgattgggaagaagcccaccgtaaactagcagga
ctagatctgcatggagaggacaaaccagcatggaatgatgagctgtctagaaagaaactc
aaggcagacgatgataccaacttagaagaggaagaggaaattcttgaacagtgtttggct
aaactggttgatgaggatgatttagaagaacctaataaagcctatgccgcaactggttat
aaggatattccagccccatcagtaatttcatcagcatgggatggatcatctcctttgtct
agcccaacatcatcagactcccttcatgacttgataaatccagctacgaatatctgggct
tcacctgaccattcacaaattttcaaggaaacagctaatgccactccaaagagtgttcag
agtagtgataagaaaccaaacaggcgaccatactcaccagcatttgaggtgagaggcacg
gatgacgccattattgaagctctgccgaagccaactgaaaatcttctcccaccaagcagc
tttacaaagaaagttcccacaactgcaattcgactggaggatttagaaaaagagttcaca
aatgagagccctcattccatgggccagcaagaaacaccacgcccttcaatgattggtcgt
ccacccccaggtctgcccccacccccaatgatgaggtcacctcaggtactccatgggtat
cctccaatgccgtttccacaacatgcatctcaaatttatcccagagcttcctcacctgga
cctggtttgaggccatttccaaggacccctcagatgttccagaaccagcagatgtacaac
aaacagccacttccacctggtatgggccacaggcaaggttatccgggaactccaccacct
cgcatgcaaaaccaattgtttggaaagatgcgttctgatcctgctcacttgatgcgtcga
cttggacttcctaatcaacccaggttctccacaccaccgagcaactatcaaaaccccaac
atgcgttctccttaccctgataacagatacatgaatcaacggtacaacaactaccctaaa
cagcaccaacaacaacagcagcaaaaccagcatcaacctacagatctggaaaaaaagatc
cacagtattttgacagctgatgagaacttgaataataaggatcgctatgctgggctgatg
actagaaaggaaaaggaatggattatcaagatacaattactgcagctaaccagcagcaac
ccaaacatggatgattattattttcagacgcatgaaagtaggaagcgagctaaagaaaga
gccaaacgaggagaaggtgtagaatttcagtacactggaggacagactcaacaaatggcc
ttgcctcagtttgatcgtgaggagagacattacaaaccattggatttccagaataccttg
ggtaaagtatcagcatcacacatatctcatccgcgagaaatggtccaagtacccaataat
tacaaagatttggaccaggaaaaaggaacccaaggttcttcaattaaagagacaagacgt
cgccgccggatcatgatagtcatagataaagcatatgatattcaactccaacttgatgat
cttgatagcaagctcctagagtctcctgctgagcaaagtaatagtataatggaggcaaag
caggataaggtagacaaacttttccagttactgaagttgaacgcacaagacgagttgtcc
aataatgatgcagagttaatcattcaagtgatgtctgttcgcaaaggaaaagtccttatc
agtcgactactacattacttcaaacaggcccaggcagaagctattttgcagtcaatttgt
agaaacattgtcatggtgataaagaaagacaaccaagatgagcttcttccacttcttatc
aatccattgggacgagtggttgacgtggcaacagcagaggttgtattccggtcactaaag
tacgtagtttatggtaataatgacccagcctcgccgctttcatcagtattagccaatcag
tttggcatcgctgtgctcagttcattgctgaagaaggcaaattcatcaacttttccttca
gataataaagaggaataccccaaaacttgggacgctatagtcagtcaagtagcaaaggaa
tttagtgacgttccagtcaaactactggctaagaatatgtctggagtaacaccacttgtt
actgttctgggctcatgtgatgtggcttatgacaagagcagtctacaggaacattacagg
ttggctttatcaacgcgagaagagcttaaatcatga
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