Allochromatium tepidum: Atep_01000
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Entry
Atep_01000 CDS
T07447
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
atep
Allochromatium tepidum
Pathway
atep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Atep_01000 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atep03019
]
Atep_01000 (rhlE)
Enzymes [BR:
atep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Atep_01000 (rhlE)
Messenger RNA biogenesis [BR:
atep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Atep_01000 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCU05423
LinkDB
All DBs
Position
complement(104256..105572)
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AA seq
438 aa
AA seq
DB search
MSFSALGLSAELLRAIAAQGYTQPTPIQSKAIPAVLARRDVLAAAQTGTGKTAAFTLPML
HLLSQSDPRQRAPRALVLTPTRELAAQVGESVSTHGQHLPLRALQIFGGVGMVPQTTALR
RGVDILVATPGRLLDHVGQGHVDLSKIEFFVLDEADRMLDMGFIHDIRRVLKLLPSKRQN
LLFSATYSREIEQLAVGLLRDPLRIEVAPRNTAAETVTQVVHPVARDAKRSLLSHLILQG
DWRQVLIFTRTKHGANRLAEQLGRDGITAAAIHGNKSQGARTRALADFKAGSLRALVATD
IAARGLDIDRLPHVVNFELPNVPEDYVHRIGRTGRAGSDGTAVSLISPDERGLLAGIERV
LGRRIDVQRIDGFEERGSTDETLQADLRRQSQSLRKHHARPRSDGRDQNGNRAQTRHPRS
HARKPGGRSGSSRPRATV
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttccgcgctcggcctctcggccgaactgctgcgcgcgatcgctgcgcagggc
tacactcagcccacgccgatccaatccaaagccattcccgccgtcctggcccgccgcgac
gtgctcgccgccgcccagaccggcaccggcaagaccgccgccttcaccctgccgatgctg
catctgctgagtcagtccgacccgcgtcagcgtgccccgcgcgccctggtcctgactccg
acccgcgaactcgcggcccaggtcggcgagagcgtcagcacccatggtcagcatctgccg
ctgcgcgcgctccagatcttcggcggcgtcggcatggtgccccagaccacggccctgcgt
cgcggtgtcgatatcctggtcgccacgccgggccggctgctcgaccacgtcggtcagggc
catgtcgatctgtccaagatcgaattcttcgtcctggacgaagccgaccgcatgctcgac
atgggctttatccacgacatccgccgcgtgctcaagctgctgccgtccaaacgtcagaac
ctgctgttctcggccacctattcacgcgagatcgagcaactggccgtcggtctgctgcgc
gacccgctgcgcatcgaggtcgccccgcgcaacaccgccgccgagacagtgacccaggtg
gtccatccggtggcacgtgacgccaagcgctcgctcctttcgcatctgatccttcagggc
gactggcggcaggtgctgatcttcacccgcaccaagcacggcgccaaccggctggccgaa
cagctcggacgcgacggcatcaccgccgccgccatccacggcaacaagagtcagggtgcc
cgcacccgcgcgctcgccgacttcaaggccggctcactgcgcgccctggtcgccaccgac
atcgccgcgcgcggactcgacatcgaccgcctgccgcatgtggtcaatttcgagctgccg
aacgtgcccgaagactatgtgcatcgcatcggccgcaccgggcgcgccggctcggacggc
accgccgtgtcgctgatcagccccgacgaacgcggactcctggccgggatcgagcgtgtg
ctcggacgtcggatcgacgtccagcgtatcgacggcttcgaggaacgcggctcgaccgac
gagacactccaggccgatctgcgccgccagtcgcaatcgctgcgcaagcatcacgcccgc
ccgcgttccgacggacgcgaccagaacggcaatcgcgcccagacccggcatccgcgcagt
catgcgcgtaagcccggcggacgtagcggcagctcgcgtccacgcgcgacggtttga
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