Allochromatium tepidum: Atep_01060
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Entry
Atep_01060 CDS
T07447
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
atep
Allochromatium tepidum
Pathway
atep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Atep_01060 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atep03400
]
Atep_01060 (recB)
Enzymes [BR:
atep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Atep_01060 (recB)
DNA repair and recombination proteins [BR:
atep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Atep_01060 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BCU05429
LinkDB
All DBs
Position
complement(110959..114795)
Genome browser
AA seq
1278 aa
AA seq
DB search
MNTTIQRLNPLEVPLHGSRLIEASAGTGKTFTLAMLYLRLILGHGGEAAFPRPLMPPEIL
VVTFTNAATDELRDRIRRRLVEAAAIFRDPLSPGPDDPLLLELRDQIAPDNRAHSARRLE
LAAEWMDEAAISTIHAWCYRMLREHAFDSANAFEQTLENDDAERLQHAAEDYWRTFLLGL
PAERLEPVLEQWSQPSDLAKAVRGLLSLAEYLPPIADPPDVIVGRCLETRRHTIATLKTD
WRTQDHIAALERLFEQAVKNKAFKQNSLNKNHRAKVLEGLRVWLETPDQTEPDIFGGQSW
QRMSSLAIGEIWNDPAKAPVDDPACRALADLHETLTTLPDPTEDLLTHAVHWLKSHVERE
KRQSAILTQNDLLIRLDQALQGEGRERLAAAIRRQFPVALVDEFQDTDPLQYRIFSSIYD
IHANHAATGFFMIGDPKQAIYAFRGADIHTYLIARAATQGRHYTLDVNYRSSTGLITAVN
ALFEHGERTATHGAFLFREPNGQGNPVPFHPARPRDQAERTLTIDGRPCPPLQGWVIPPG
PNGRLSKDAYRARTAEAAARTIAELLRLGQEGRALLPVGQDGERPLEPSDLAVLVNNRGE
ADAIRTELRRLDVASVYLSERGNVFDTQIARDLAVLLRAIADPFDDRLMRQALATRLLGQ
GLTDLDRLNRDELHWETQGERLRDLNGRWRRQGFLPMLYRLIGEFRIAARLLGTTDGERA
MTDLLHLGELLQRASEELDGEQALVRFLEEAIADSDAATGETAEARQLRLESDARLVRVV
TIHKSKGLEYPLVFLPFIADCRRTQSKDRPLKTHDAAHRLQVHLGGDDALVAQADRERLG
EDLRKLYVGLTRARHANWLGLGAISDLEHSALGYLLGLDGRTVAWSGDDQPETEGSGNEA
HATGNGDLAARLRRLSCVTLIDPPAADPAPYQAETEVELEDARPAPDWRPRAWWISSYSA
LSRGAQLAESDGIEAEASATSLPVSPVDSVETASDETAREESDAGESQEIQSPPGTLHAF
PRGGRYGTFLHGLLEWAATQRAPKRTDHPDAGRHGFAAALARADARRRMLEQRCTPRRLG
DWVEPLDAWLTTLLDRTWHLDALALPDGTVPRLRFADLDPSRYQVELEFWIEGRAVDLRR
LDQLVTQHTLAGLERPQLNTTYLNGMIKGFIDLVFEHQGRYYVLDWKSNRLGPDDNAYTP
EAMRAAIAERRYDLQYVLYLLALHRQLKARLPDYDYDRHLGGAIYVFLRGGRSASQGLFM
DRPSRVLIESLDRLFAGV
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccaccatccagcgactgaacccgctcgaagtccccctgcacggctcacggctg
atcgaggccagcgccggcaccggcaagaccttcaccctggccatgctctatctgcgcctg
atcctgggacatggcggcgaagcggccttcccgcgcccgctcatgccgcccgagatcctg
gtcgtgaccttcaccaatgccgccaccgacgagctgcgcgaccgcatccggcgccggctg
gtggaggcggcggcgatctttcgtgatccgctgtcgcccggtccggacgaccccctgttg
ctcgaactgcgcgaccagatagcccctgacaatcgagcgcactccgcccgccgcctggaa
ctggccgccgaatggatggacgaggcggccatctccaccatccatgcctggtgctaccgg
atgctgcgcgaacacgccttcgacagcgccaacgccttcgaacagacgctggaaaacgac
gacgccgaacgtctgcaacacgccgccgaggactactggcgcaccttcctgctcggactt
cccgccgagcgtctggaacccgtgctggagcaatggtcgcagccatcggatctggccaag
gcggtccgaggtctgctgtccctggccgagtatctgccgccgatcgccgacccgccggac
gtgatcgtcggacgctgtctggagacccgccgacacacgatcgccacgctcaagaccgac
tggcgcacgcaggatcatatcgccgccctggagcgactcttcgagcaggcggtcaagaac
aaggccttcaagcaaaactcgctcaacaaaaaccaccgcgccaaggtgctggagggcttg
cgggtctggctggagacgccggatcagaccgaacccgacatcttcggcggccagtcctgg
caacggatgtcctcactggccatcggcgagatctggaacgatcccgccaaggccccggtc
gacgatccggcctgccgcgcgctggccgacctgcatgaaacactcaccaccctgcccgat
cccaccgaggatctgctgacccacgccgtccactggctcaagagccacgtcgagcgcgag
aagcgccaaagcgcgatcctgacccagaacgacctgctgatccggctcgatcaggcactc
cagggcgagggccgcgaacggctcgccgccgccatccgccgacagttcccggtcgcgctg
gtcgacgaattccaggacaccgacccgctccagtaccgcatcttctcgtccatctacgac
attcacgccaatcacgccgccaccggcttcttcatgatcggcgaccccaagcaggcgatc
tatgccttccgcggcgccgacatccacacctatctgatcgcgcgcgccgccacccagggc
cgtcactacacgctcgacgtcaactatcgctcctcgaccggcctgatcacggcggtcaac
gccctcttcgagcatggcgagcgcaccgccacgcacggcgccttcctgtttcgcgaaccg
aacggccagggcaacccggttcccttccatccggcgcgcccgcgcgatcaggccgagcgc
accctgaccatcgacggccggccctgtccgccgctccagggctgggtcatcccacccggc
cccaacggccggctgagcaaggacgcctatcgcgcgcgcaccgccgaggccgccgcccgc
accatcgccgagctgctgcggctcggacaggagggacgcgccctgctgcctgtgggtcag
gacggcgaacgcccgctcgaacccagcgatctggcggttctggtcaacaatcgcggcgag
gccgatgccatccgcaccgagctgcgccggctcgacgtggccagcgtctacctctccgag
cgcggcaacgtcttcgacacccaaatcgcacgcgacctggcggtgctgctgcgcgccatc
gccgaccccttcgacgaccggctgatgcgtcaggccttggccacccgcctgctcggccag
ggcttgacggatctggaccggctcaatcgcgacgaactccattgggagacccagggcgag
cggctgcgcgacctcaacggacgctggcgtcgtcagggattcctgcccatgctctaccgg
ctgatcggcgagttccggatcgccgcccgtctgctcggaaccacggacggcgagcgggcc
atgacggatctactgcatctgggcgagctgctccagcgcgcgagcgaggaactcgacggt
gaacaggccctggtgcgttttctcgaagaagcgatcgccgacagtgatgcggccaccggc
gagacagccgaggcgcgccagctgcgactcgaaagcgatgcgcgtctggtgcgggtcgtc
accatccacaaatccaagggactcgaatatccgctggtgttcctgcccttcatcgccgac
tgccggcgcacccagtccaaggatcgaccgctcaagacccatgacgccgcgcatcggctc
caggtgcatctgggcggagacgacgcgctcgtcgcccaggccgaccgcgagcgtctgggc
gaggatctgcgcaaactctacgtgggactgacgcgcgcgcgtcacgccaactggctgggg
ctgggggcgatctcggatctcgaacactcggcgctcggttatctgctcggactcgacggc
cggacggtcgcgtggtccggggacgatcagcccgaaaccgagggttcggggaacgaggcc
catgcaaccggcaacggcgatctggccgcccgactgcgccgactgtcctgcgtgaccctg
atcgacccgcccgccgccgatcctgcgccctatcaggccgagaccgaggtcgaactcgaa
gacgcccgccccgcgcccgactggcgcccgcgtgcctggtggatcagcagttactcggcg
ctgagccgaggcgcgcagttggccgagagcgatggaatcgaggccgaggcatccgcgacc
tccctgcccgtgtcacccgtcgattcggtcgaaacggcgagcgatgagaccgcacgcgag
gagtcggacgccggcgaatcccaggagatccagtctcccccaggcaccttgcacgccttc
ccgcgcggcggacgctatggcaccttcctgcatgggctgctggaatgggcggcgactcag
cgcgcaccgaagcgaaccgatcaccccgacgcgggccgacacggcttcgccgccgcgctg
gccagagccgatgcgcggcgccggatgctcgaacagcgctgcacaccgcgccgactgggc
gactgggtcgaaccgctcgacgcctggctgaccacactgctcgatcgcacctggcatctc
gacgcactcgccctgcccgacggcacggttccacgactgcgattcgccgacctcgatccc
agccgctatcaggtcgaactggagttctggatcgagggccgcgccgtcgatctgcgccga
ctcgatcaactcgtcactcagcacacgctcgccggtctcgaacgcccccaactcaacacg
acctacctgaacgggatgatcaagggctttatcgatctggtgttcgagcatcagggacgt
tattacgtgctcgactggaaatccaaccggctcggcccggacgacaacgcctacaccccg
gaggccatgcgcgcggccatcgccgagcggcgctacgatctgcaatacgtcctctatctg
ctcgccctgcaccgtcagctcaaggcgcgactgccggactacgactacgaccgccatctc
ggcggggcgatctatgtctttctgcgcggcggccggtcggcgagccaggggctgttcatg
gaccgaccgtcgcgcgtgctgatcgagtcgctcgaccggctctttgcaggagtgtga
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