Allochromatium tepidum: Atep_12310
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Entry
Atep_12310 CDS
T07447
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
atep
Allochromatium tepidum
Brite
KEGG Orthology (KO) [BR:
atep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atep03032
]
Atep_12310 (topA)
03400 DNA repair and recombination proteins [BR:
atep03400
]
Atep_12310 (topA)
Enzymes [BR:
atep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Atep_12310 (topA)
DNA replication proteins [BR:
atep03032
]
Prokaryotic type
DNA Topoisomerases
Atep_12310 (topA)
DNA repair and recombination proteins [BR:
atep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Atep_12310 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF1272
Motif
Other DBs
NCBI-ProteinID:
BCU06554
LinkDB
All DBs
Position
1320858..1323167
Genome browser
AA seq
769 aa
AA seq
DB search
MNLVIVESPAKAKTIKKYLGPSFEVVASYGHVRDLVPKEGAVDPDHGFAMKYQIIERNEK
HVQSIAKKLKDCEALYLATDPDREGEAISWHIHELLKSRRQLGDKPVHRVVFNEITKRAV
QDAIANPRGISYDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICER
ETEIEAFVRREYWTIEADTAKDERAFIARLTTFGGEKVEQFTITDEARATEVRIALESAA
GGKLRVEQVERKQRKRQPAPPFITSTLQQEAARKLGFTAQHTMRVAQQLYEGVDVGSGAV
GLITYMRTDSVNLAQEAIAEIRAYVVERYGEADLPDAPRLFKTKAKNAQEAHEAIRPTSI
RREPSAVKAHLTVEQFKLYDLIWKRTLACQMAHALINQVAVDLSAGAGNILRATGSMVVD
PGFMRVYVEGRDDAKGAADDDEDRMLPEMKVGELVDLIAIRPEQHFTEPPPRYSEATLVK
ALEEFGIGRPSTYASIISTLQDREYVILDKKRFVPTDVGRVVNRFLTEYFTSYVDYDFTA
RLEDDLDAVSRGEEEWVPLLERFWRPFKDLVDHTQEHVKRSDVTQERIEETCPKCGGPLA
IRLGRNGRFIGCTQYPECDYTRDLDPNKAEREAPEVVEGRSCPLCGSALEIKRGRYGKFI
GCSAYPTCKHIEPLDKPEDTGVICPKCNKGTLQKKKSRRGKVFYSCSTYPKCDYALWDEP
LAEPCPSCGWPVLTLKITKTQGAAKVCPQKECGYRAPVEETDADSGTAN
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcgtcatcgtcgaatcccccgccaaggccaagaccatcaagaagtacctcgga
cccagcttcgaggtcgtcgcctcctatggccatgtgcgcgatctggtgcccaaggagggc
gcggtcgatccggatcacggcttcgcgatgaagtatcagatcatcgagcgcaacgagaag
cacgtccagtcgatcgccaagaagctcaaggactgcgaggcgctctatctggccaccgac
cccgatcgcgagggtgaggccatctcctggcacatccacgagctgctcaagagccggcgt
cagctcggcgacaagccggtgcatcgcgtggtcttcaacgagatcaccaagcgcgcggtc
caggacgccatcgccaatccgcgcgggatctcctatgacctggtcaacgcccagcaggcg
cgccgggcactcgactatctggtcggcttcaatctctcgccgctgctgtggaagaagatc
cggcgcggactctcggccggacgggtgcagagtccggcactgcgcctgatctgcgagcgc
gagaccgagatcgaggccttcgtccggcgcgagtactggaccatcgaggccgatacggcc
aaggatgaacgcgccttcatcgcccgactcaccaccttcggcggcgagaaggtcgagcag
ttcacgatcaccgacgaggcgcgcgccaccgaggtcaggattgcgctggagagcgccgcc
ggcggaaagctcagggtcgagcaggtcgagcgcaagcagcgcaagcgccagccggccccg
cccttcatcacctccacgctccagcaggaagcggcgcgcaagctcggtttcaccgcccag
cacaccatgcgcgttgcccagcagctctacgagggcgtggacgtcggttcgggcgcggtc
ggtctcatcacctacatgcgtaccgactcggtgaatctggcccaggaggccatcgccgag
atccgcgcctatgtcgtcgagcgctatggcgaagcggatctgccggacgcgccgcgccta
ttcaagaccaaggccaagaacgcccaggaggcccacgaggcgatccgtccgacctcgatc
cggcgcgagccgtcggcggtcaaggcccatctcacggtcgagcagttcaagctctacgat
ctgatctggaagcgcacgctcgcctgtcagatggcccatgcgctcatcaaccaggtcgcg
gtcgacctgagcgccggcgcgggcaacatcctgcgcgccaccggctcgatggtggtcgat
cccggcttcatgcgcgtctatgtggaaggacgcgacgacgccaagggcgccgccgacgac
gacgaggaccggatgctccccgaaatgaaggtcggcgagctggtcgacctgatcgccatc
cgccccgagcagcatttcaccgagccgccgccgcgctacagcgaggccacgctcgtcaag
gcgctcgaagaattcggcatcggccggccctcgacctatgcctcgatcatctccacgctc
caggatcgcgaatatgtgatcctggacaagaagcgcttcgtgccgaccgacgtcgggcgc
gtggtcaaccgcttcctgaccgagtatttcacctcttacgtcgactacgacttcacggcg
cgtctggaggacgatctggatgccgtctcgcgcggggaggaagagtgggttccgttgctg
gagcgtttctggcgcccgttcaaggatctggtcgaccacacccaggagcacgtcaagcgc
agcgacgtgacccaggagcgcatcgaggagacctgtcccaaatgcggcggtccgctcgcc
atccggctcgggcgcaacgggcgcttcatcggctgcacccagtatcccgagtgcgactac
acccgcgatctcgacccgaacaaggccgaacgcgaggcgcccgaggtcgtcgagggccgc
tcctgtccgctgtgcggctcggcgctggagatcaagcgcggacgctacggcaagttcatc
ggttgcagcgcctatccgacctgcaagcacatcgagccgctcgacaaacccgaggatacg
ggcgtcatctgtccgaagtgcaacaagggcacgctccagaagaagaaatcgcggcgcggc
aaggtgttctattcctgctcgacctatcccaagtgcgactatgcgctctgggacgagccg
ctcgccgaaccctgtccgagttgcggctggccggtgctgacgctcaagatcaccaagacc
cagggtgcggccaaggtctgtccgcagaaggaatgcggctatcgtgcgccggtcgaggag
acggacgccgattcgggcacggcgaactga
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