Allochromatium tepidum: Atep_12630
Help
Entry
Atep_12630 CDS
T07447
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
atep
Allochromatium tepidum
Pathway
atep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Atep_12630 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atep03019
]
Atep_12630 (pnp)
03016 Transfer RNA biogenesis [BR:
atep03016
]
Atep_12630 (pnp)
Enzymes [BR:
atep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Atep_12630 (pnp)
Messenger RNA biogenesis [BR:
atep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Atep_12630 (pnp)
Transfer RNA biogenesis [BR:
atep03016
]
Prokaryotic type
tRNA degradation factors
Atep_12630 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
OB_RRP5_4th
S1_RRP5
KH_2
KH-I_KHDC4-BBP
RNase_II_C_S1
KH_KhpA-B
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
BCU06586
UniProt:
A0ABM7QLI1
LinkDB
All DBs
Position
1355684..1357783
Genome browser
AA seq
699 aa
AA seq
DB search
MIPTPIVKEFQFGKQTVRLETGEIARQADGAVLIDMDDTVVLVTVVVDKRPGAERDFLPL
TVEYQEKTYAAGRIPGGFFRREGRPSEGEILTARLIDRPIRPLFAKGFCNEVQIIATVKS
LNPSVNPEVPALIGASAALALSGVPFNGPIAAARVGYKNGEYILNPAVIGLGPDSDLDLV
VAGTDKAVLMVESEARGLSEDVMLGAVLFGHEQMQVAIQAIRELAAVAGKPAMDWTPHVI
DPALTEQVRAAGGEAIAAAYRIKEKQARYTALGTARTAIIEQLCAVETPAWTEAQVKAAI
EALESTTVRESILAGEPRIDGRDTKTVRPITIRTGVLPRTHGSALFTRGETQAMVITTLG
TERDSQIIDALEGERREHFMLHYNFPPFCVGEIGRVGSPKRREIGHGRLAKRGVLAVMPS
IEEFPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGVAMGLIKEGERFAV
LTDIMGDEDHLGDMDFKVAGTATGINALQMDIKIEGITREIMEIALAQAKEGRLHILGEM
NKVIDSHRVEMSEHAPRIIEMKIHPEKIRDVIGKGGSVIRAITEETGATIDINDDGVVKI
FSVVKAAGEEAKRRIRLITADVEVGKVYEGKVARLMDFGAFVTILPGRDGLVHISQICEE
RVQSVSDKLKEGDVVRVKVLEVDKQGRIRLSMKAVEPGE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtgattcccacccccatcgttaaagagttccaattcggcaagcagaccgtcaggctggaa
accggcgagatcgcgcgccaggccgatggtgccgtcctgatcgacatggacgacaccgtg
gtcctcgtgacggtcgtggtcgacaagcggccgggcgcggagcgcgacttcctgcccctg
acggtcgagtatcaggaaaagacctatgccgccggacgcatcccaggcggcttttttcgg
cgcgagggccgtccgagcgagggcgagatcctcacagcgcgtctgatcgaccgtccgatc
cgcccgctgttcgccaagggtttctgcaacgaggtgcagatcatcgccaccgtcaagtcg
ctgaacccttcggtcaatcccgaggttccggcgctgatcggtgcgtccgccgcgctcgcg
ctctcgggcgtacccttcaacggcccgatcgccgccgcgcgcgtcggctacaagaacggt
gaatacatcctcaatccagcggtgatcggcctggggccggactcggatctggatctggtg
gtcgccgggacggacaaggccgtgctcatggtcgagtccgaggcgcgtgggctatcggaa
gacgtcatgctcggcgcggtgctcttcgggcacgagcagatgcaggtcgcgatccaggcg
atccgcgagctggccgccgtggccggcaagccggcgatggactggacgccgcatgtcatc
gatccggcgctgaccgagcaggtgcgcgcggccggtggcgaggcgattgccgccgcctac
cgcatcaaggaaaagcaggcgcgttataccgcgctcggtacggcgcgcaccgccatcatc
gaacaactgtgcgccgtcgagacgcccgcctggaccgaagctcaggtcaaggcggccatc
gaggcactggagtcgaccacggtgcgcgagtcgatcctggccggcgagccgcgcatcgac
gggcgcgacaccaagaccgtgcgtccgatcaccatccgcaccggcgtgctgccgcgcacc
cacggctcggcgctcttcacgcgcggcgagacccaggcgatggtcatcaccacgctcggt
accgagcgcgactcgcagatcatcgatgcgctggaaggcgagcggcgtgagcacttcatg
ctgcattacaacttcccgcccttctgcgtcggcgagatcggccgtgtcggcagccccaag
cggcgcgagatcggtcacggacgtctggccaagcgtggcgtgctggcggtgatgccgagc
atcgaagagttcccctattcggtgcgcgtggtctccgagatcaccgagtccaacggctcc
agctcgatggccagcgtctgcggcaccagtctggcgctgatggacgcgggcgtgccgatc
aaggcgccggtcgccggtgtcgccatgggtctgatcaaggaaggcgagcgcttcgcggtc
ctcaccgacatcatgggtgacgaagaccacctgggcgacatggacttcaaggtggcgggt
accgccaccggcatcaatgcgctccagatggacatcaagatcgagggcatcacgcgcgag
atcatggagatcgccttggctcaggccaaggaaggacggctgcatatcctcggcgagatg
aacaaggtcatcgactcgcatcgcgtcgagatgtccgagcacgccccgcgcatcatcgag
atgaagatccatcccgagaagatccgcgacgtcatcggcaagggcggctcggtcatccgc
gccatcaccgaggagacgggtgcgaccatcgacatcaacgacgatggcgtggtcaagatc
ttctccgtggtcaaggccgccggcgaggaggccaagcgccgcatccgtctgatcaccgcc
gatgtcgaggtgggcaaggtctacgagggcaaggtcgcgcgtctgatggacttcggcgcc
ttcgtcaccatcctgcccggacgcgatgggttggtgcacatctcgcagatctgcgaggag
cgcgtgcagtcggtcagcgacaagctcaaggaaggcgacgtggtgcgcgtcaaggtgctg
gaggtcgataagcagggccgtatccgtctgagcatgaaggcggtcgaaccgggcgaataa
DBGET
integrated database retrieval system
