Allochromatium tepidum: Atep_13320
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Entry
Atep_13320 CDS
T07447
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
atep
Allochromatium tepidum
Pathway
atep03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
atep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Atep_13320 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atep03021
]
Atep_13320 (rpoA)
03400 DNA repair and recombination proteins [BR:
atep03400
]
Atep_13320 (rpoA)
Enzymes [BR:
atep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Atep_13320 (rpoA)
Transcription machinery [BR:
atep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Atep_13320 (rpoA)
DNA repair and recombination proteins [BR:
atep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Atep_13320 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_XRCC3_RpoA
LapD_MoxY_N
TacA1
BetaGal_dom3
Motif
Other DBs
NCBI-ProteinID:
BCU06655
UniProt:
A0ABN6G9N1
LinkDB
All DBs
Position
1420784..1421797
Genome browser
AA seq
337 aa
AA seq
DB search
MTDAIGEFLKPRIVKVEEVDGNPCHSRVSLEPLERGFGHTLGNALRRILLSSMDGYAVTE
VEIQGVLHEYTTLEGVQEDVLEILLNLKQIAIVLHGKDEAIFALSKRGPGPVTAGDIAID
HTAEITNPELVIANLTADTELSMTLTVRRGRGYEPASQREMEGGEDRPIGKLPIDASFSP
VRRVAIEVQSARVEQRTDLDRLVIDLETNGTIDPKETIQRAATILRDQLSSFVALEGTVP
AETQVQETRDESPYDPILLRPVDDLELTVRSANCLKAENIYLIGDLIQRTEVELLKTPNL
GKKSLTEIKDVLATRGLSLGMRLENWPPENIAELSIR
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgctattggcgaatttctcaagccgcgcatcgtcaaggtcgaggaggtcgac
ggcaacccgtgtcattcacgggtctcgctggagccgctcgagcgcggtttcggccacacg
ctcggcaacgcgctgcggcgaatcctgttgtcgtcgatggacgggtacgccgtaacggaa
gtcgagatccagggcgtgctgcacgagtacaccacgctggagggtgtgcaggaggacgtg
ctcgaaatcctgctcaacctcaagcagatcgccatcgtgctgcatggcaaggacgaggcg
atcttcgcgctgagcaagcgcggtccgggaccggtgacggcgggcgacatcgccatcgat
cacacggccgagatcaccaaccccgagctggtgatcgccaacctgacggccgacaccgag
ctgagcatgaccctgaccgtgcgtcgcggtcgcggctatgagccggcgagccagcgcgag
atggaggggggcgaggatcggccgatcggcaagctgccgatcgacgcctccttcagcccg
gtgcggcgcgtggccatcgaggtgcagtcggcgcgtgtcgaacagcgtaccgacctcgac
cggctggtgatcgatctggagaccaacggcaccatcgatccgaaggagaccatccagcgc
gcggccaccatcctgcgcgatcagttgtcgagcttcgtggcgctggaaggcacggtgccg
gccgagacccaggttcaggagacacgcgacgagtcgccttacgatccgatcctgctgcgt
ccggtcgacgacctggagctgacggtgcgttcggccaactgcctcaaggccgagaacatc
tatctgatcggcgacctgatccagcgcaccgaggtcgagctgctcaagacgcccaatctg
ggcaagaagtcgctcaccgagatcaaggacgtgctggccacgcgcgggctgtcactgggc
atgcgtctcgagaactggccgcccgagaacatcgccgaactcagtattcgctaa
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