Allochromatium tepidum: Atep_13350
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Entry
Atep_13350 CDS
T07447
Name
(GenBank) ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
atep
Allochromatium tepidum
Brite
KEGG Orthology (KO) [BR:
atep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
atep03009
]
Atep_13350
Enzymes [BR:
atep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Atep_13350
Ribosome biogenesis [BR:
atep03009
]
Prokaryotic type
rRNA helicases
Atep_13350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCU06658
LinkDB
All DBs
Position
complement(1423282..1424646)
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AA seq
454 aa
AA seq
DB search
MNTHFSEFLLPDALMRGLANEGYTTPTPVQAQVIPPAMDGVDLLVSAATGSGKTAAFLLP
IMQRLIDVPRHDGSTRALILVPTRELARQIHIHFMRLGSYTRLTSGVITGGESKAHQIAT
LRKNPEILVATPGRLLEFLETGQADLSDLEFLVLDEADRMLDMGFADDVLAIIRYSRPER
QSLLFSATLEQRGLSRITERLLRDPQRVDIDPVRQQHPDIAHWLFLSDGLEHKQQQLLWL
LRNETYEKALIFTNTREGAVALGNFLQGQQQRVAVLHGELDQRERNRVMGLLHSGRVNTL
IATDLAARGLDVPGVQRVFNFDLPRRGNDYLHRTGRTGRAGEAGVAISLVGPPEWNRMES
IARYLNLTFETREIKGLKAGFKGPTKRKKPSKPTAMSGKRKSTAATEEKPRKKERLRNRK
NIGKRRVPSSVKAQEAGHAPLTRRAREDAKPDAD
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgaacacacacttctctgaattcctccttcccgacgcgctcatgcgcggtttggccaac
gaaggctatacgaccccgaccccggtccaggcccaggtgatcccgccggcgatggacggc
gtcgatctgctggtctcggcggccaccggctcgggcaagacggcggccttcctgctgccg
atcatgcagcgcctcatcgacgtgccgcgccacgacggcagtacccgcgccctgatcctg
gtgccgacccgcgagctggcgcgtcagatccatatccatttcatgcgtctgggaagctat
acgcgcctgaccagcggcgtcatcaccggcggcgagtccaaggcgcatcagatcgccacc
ctgcgcaagaatcccgagatcctggtcgccacgcccggacgtctgctcgaattcctggag
acgggtcaggcggatctgagcgacctggagttcctggtactcgacgaggccgaccggatg
ctcgacatgggctttgccgacgacgtgctggcgatcatccgttacagccgtcccgagcgc
cagtcgctgctgttctcggcgacgctcgagcagcgcggtctgagtcggatcaccgagcgt
ctgctacgcgatccgcagcgggtcgatatcgatccggtccgccaacagcatccggacatc
gcgcattggctgttcctgagtgacggactggaacacaagcaacagcaattgctctggctg
ttgcgcaacgagacctacgaaaaagcgctgatcttcaccaacacccgcgagggggccgtg
gcgctgggcaactttctccagggacaacaacagcgggtcgccgtgctgcatggcgaactc
gatcagcgcgagcgcaaccgcgtcatgggcctgttgcacagtgggcgtgtgaatacgctc
atcgcgaccgatctggcggcgcgcggcctggatgtgccgggcgtgcagcgagtgttcaat
ttcgatctgccgcgccgaggtaacgactatctgcatcgcaccggacgcaccggacgcgca
ggtgaagccggcgtggccatctcgctggtcggtccgcccgaatggaaccggatggagagc
attgcgcgctatctcaacctgaccttcgaaacgcgcgagatcaaaggactcaaggccggc
ttcaaggggccgaccaagcgcaagaaaccgagcaagccgaccgctatgagcggcaagcgc
aagtccacggccgccacggaagagaaaccgcgcaagaaggagcgtctgcgcaaccgcaag
aacatcggcaagcgacgtgtcccgtcgagcgtcaaggcacaagaggccggtcatgcgccg
ctgacacgacgcgcacgcgaggatgccaagccggacgcggattag
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