Allochromatium tepidum: Atep_15130
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Entry
Atep_15130 CDS
T07447
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
atep
Allochromatium tepidum
Brite
KEGG Orthology (KO) [BR:
atep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
atep03009
]
Atep_15130 (rlmD)
Enzymes [BR:
atep01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Atep_15130 (rlmD)
Ribosome biogenesis [BR:
atep03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Atep_15130 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
PCMT
RrnaAD
TRAM
Methyltransf_11
MTS
Cons_hypoth95
Methyltransf_23
Met_10
Methyltransf_12
Methyltransf_4
Methyltransf_15
Methyltr_RsmB-F
Methyltransf_32
PrmA
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
BCU06836
LinkDB
All DBs
Position
complement(1606715..1608037)
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AA seq
440 aa
AA seq
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MSRKPKTLPAPIEAEIQTLTHEGRGLTRIDGKTLFVDGALPGERVRLRYTRVQRRFDEAE
VEEVITASPDRIEPKCAHFGVCGGCTLQHLNPEAQIRVKHDSLADVFERIGKVTPERRLD
PLTAESWGYRRKARLGVRHVVKKGRTLVGFRERRNSFLADLRRCEVLHPQVGGRLETLAA
TIETLSIRDHVPQIEMAMGDGPCVLVFRVMQTPTPEDEARLLELGRREGFHIYLQDGGID
SIRPLPGQEVALSYSLPNHGVEIGFLPSDFTQVNLELNRRMVDQALDLLGPDPDDAVLDL
FCGLGNFTLPLARRSAEVVGVEGDAGLVERARANAAHNGLDNVRFHVADLQTELSTEAPW
TRQRFTKALIDPPRSGALEVLDWLPRLGVERLVYVSCYPTTLARDADRLVNELGYRLRAA
GVMDMFPHTSHVESMALFER
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgagaaaacccaaaaccctccccgcgcccatcgaggccgagatccagaccctgacc
catgaaggccgcggcctgacccgcatcgacggcaagaccctgttcgtcgatggcgcgcta
cccggcgagcgcgtgcgtctgcgctatacccgcgtccagcgccgcttcgacgaggccgag
gtcgaggaagtcatcacggcctcgcccgaccgcatcgaaccgaagtgcgcccacttcggc
gtctgcggcggctgtacgctccagcatctgaaccccgaggcccagatccgcgtcaagcac
gacagtctggccgacgtcttcgagcgcatcggcaaggtgacgcccgaacgccggctcgac
ccgctcaccgctgagtcctggggctatcgacgcaaggcacggctcggtgtgcgccatgtc
gtcaagaaaggccgcaccctggtcggctttcgcgaacggcgcaacagctttctggccgat
ctgcgccgctgcgaggtgctgcacccgcaggtcggcgggcgcctggagacgctggcggcg
accatcgagaccctgagcatccgcgaccacgtcccccagatcgagatggccatgggcgat
ggtccctgtgtgctggtgttccgcgtcatgcagacgccgacgcccgaggacgaggcgcgt
ctgctcgaactcggccgacgcgaaggcttccacatctatctccaggacggcggcatcgac
agcatccggccgctgccggggcaggaggtggcgctgagctacagtctgccgaaccacggc
gtcgagatcggcttcctgccgagcgacttcacccaggtcaatctggaactcaaccggcgc
atggtcgatcaggcgcttgatctgctcggccccgatccggacgacgcggtgctggatctg
ttctgcggactgggcaatttcaccctgccgctggcgcgccggtcggccgaggtcgtgggc
gtcgagggcgatgccggactggtcgagcgcgcacgcgccaatgccgctcacaacggtctc
gacaatgtccggttccatgtcgccgacctccagaccgagctgagcaccgaggccccctgg
acccgacaacgcttcaccaaagccctgatcgacccgccgcgcagtggcgccctggaggtg
ctcgactggctgccgcgtctcggcgtcgagcgtctggtctatgtctcctgctacccgacc
accctggcacgcgatgccgaccggcttgtcaacgaactcggctatcgactgcgcgcggcg
ggcgtgatggacatgttcccgcataccagccatgtcgaatccatggcgctcttcgaacgg
tga
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