Allochromatium tepidum: Atep_20190
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Entry
Atep_20190 CDS
T07447
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
atep
Allochromatium tepidum
Brite
KEGG Orthology (KO) [BR:
atep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atep03019
]
Atep_20190 (hrpA)
Enzymes [BR:
atep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Atep_20190 (hrpA)
Messenger RNA biogenesis [BR:
atep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Atep_20190 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
DEAD
AAA_25
nSTAND3
NACHT
T2SSE
ABC_tran
AAA_19
RsgA_GTPase
AAA_29
Motif
Other DBs
NCBI-ProteinID:
BCU07342
LinkDB
All DBs
Position
2146800..2150729
Genome browser
AA seq
1309 aa
AA seq
DB search
MDLPNDQDIAGCLIRDRHSIRSRLRNLRRRARAGQPIDDGLSKLWDCIRASQSVVAQRQA
LVPRIEYPPELPVSERRDEVAALIERHQVIVLCGETGSGKSTQLPKLCLDLGRGRFGRIG
HTQPRRIAARSLASRVAQELGVENGGLVGYKVRFHDRVRPETAIKLMTDGMLLAEIQQDR
WLNEYDTLIIDEAHERGLNIDFLLGYLKGLLPRRPDLKLIVTSATIDPERFARHFADSER
RPAPIIEISGRTYPVEVRYRPPEEESAAECDEPMQRAISDAVEELAQVGRGDVLVFLSGE
REIRTTAETLRKHHPPSTEILPLFARQGPQEQARIFQPHGTRRVILATNVAETSLTVPGI
HYVVDPGFARISRYSHRTKVQRLPVERVSQASANQRKGRCGRVAAGVCIRLYSEDNFQSR
AAFTEPEIARANLAAVILQMKLLGFGAIEHFPFIDKPDSRLINDGYRTLEELGALDEARE
LTALGRQLARLPVDPRIGRMLLAAGEHQCLSEVLVIAAALSVQDPRERPHDKQQAADEIH
AGFSHPESDFITFLNLWHFLDKERRQLSRNKFVKLCQRHFLSWNRVQEWRDIQAQLREQM
LEMGFKESAATASQAPSLDADAYEKIHRALLAGLLGNIGFREAEREFQGARNSRFLIHPS
SALFAKPPKWVMVAERVETTRRYGRIAAAVQPGWIERAAGHLLQRSYSEPHWQAKSGQVA
AFEKVTLFGVTLVPKRRVNYGPINPAEAREIFLRFALTEGDFDTRAPFWRHNRELIEYVR
HLESKSRRRDILVDEEAIYAFYAERVPAGIYSTPQFERWLRQVTRRTPRILHMRLSDLMR
HEASEISAQSFPDQLQVGATALPLEYRFEPGAAADGVTLVVPLPLINQVSPDRLDWLVPG
LIEERITALLRGLPKTLRKAFVPIPDTAKRLAARLVPSDRPLIQALAEEIRAMSGVRIPE
DAWDQSVIPPHLRMKIRLVDESGQALAVGDDPLALKRRFAAQGAQGFTRIPSAAPALERE
GVTRWTFGDLPESVDLTRAGIKLRGYPALVDQGESVAIRVLDSTENAAAAHRAGLRRLIM
LHLGADIRQLRKQLPDLDRMRLQYAKAPMPTTQPADLADELIALILDLTFIEDQLPIRAQ
AVFEQRLAVCKPQLFPTANTVCRLIGTILGEYQALRKRLASINQVNWMPSVLDIRDQLDA
LVFRGFPQTIPYVHLKEYPRYLKAIGQRIERLAHAPDRDRRWMSEMAGIQSRWRERETAA
RAAGRQDPRLDEIRWLLEELRVSLFAQQLGTACPVSVKRIEARWKELGL
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atggatctacccaatgaccaggacatcgcgggctgtctgatccgcgatcgtcactccatc
cggtcgcgtctgcgcaatctgcgccgacgcgcgcgagccggtcagccgatcgacgatggt
ctaagcaagctctgggactgtatccgggcctcccaaagcgtggtcgcccagcgtcaggca
ctggtgccccggatcgagtatccgccggaactgccggtcagcgagcggcgcgacgaggtc
gcggcactgatcgagcgccatcaggtgatcgtgctctgcggcgagaccggctcgggcaag
tcgacccagttgcccaaactgtgtctggatctgggacgcgggcggttcggacgcatcggc
catacgcagccaaggcgcatcgccgcgcgcagtctggccagtcgggtggcgcaggaactg
ggggtcgagaacggcggactggtcggctacaaggtgcgcttccatgatcgcgtgcgccct
gagaccgcgatcaagctgatgaccgacgggatgctgctggccgagatccagcaggaccgt
tggctcaacgagtacgacacactcatcatcgacgaggcccacgagcgtgggctgaacatc
gatttcctgctcggctatctcaagggactgctgccgcgccggcccgatctcaagctgatc
gtcacctcggccaccatcgaccccgagcgttttgcgcgccatttcgccgacagcgagcgt
cggcccgcgcccatcatcgagatctcgggtcggacctatccggtcgaggtgcgctaccgt
ccgcccgaggaagagagcgccgccgagtgcgacgagccgatgcagcgcgcgatctcggac
gcggtcgaggagctggcgcaggtcgggcgcggcgacgtgctggtgttcctctcgggcgag
cgcgaaatccgcaccaccgccgagacgctgcgcaagcatcatccgccctcgaccgagatc
ctgcccctgttcgcccgtcagggaccgcaggagcaggcgcgcatcttccagccgcacggc
acgcgccgggtgatcctggccaccaacgtggccgagacctcgctcacggtgccgggcatc
cattacgtcgtcgatccgggcttcgcgcgcatcagccgctacagccatcgcaccaaggtc
caacggttgccggtcgagcgcgtctcgcaggccagcgccaaccagcgcaagggacgctgc
gggcgcgtggcggccggtgtctgcatccggctctacagcgaggacaatttccaatcgcgc
gccgcattcaccgaacccgagatcgcgcgcgccaatctggccgccgtcatcctgcagatg
aagctgctcggcttcggcgccatcgagcacttccccttcatcgacaagccggattcgcgg
ctcatcaacgacggctatcgcaccctggaggaactcggggcgctcgacgaggcgcgcgag
ctgaccgcgctcggacgtcagctcgcgcgcctgccggtcgatccgcgcatcgggcggatg
ctgctggcggccggcgagcatcagtgtctctccgaggtgctggtgatcgccgccgcgctc
agcgtgcaggatccgcgcgagcgtccgcacgacaaacagcaggccgccgacgagatccat
gccggcttcagccatcccgagtcggacttcatcacctttctcaacctctggcacttcctc
gacaaagagcgccggcagctctcgcgcaacaagttcgtcaagctctgtcagcgtcacttc
ctgtcctggaaccgggtgcaggagtggcgcgacatccaggcccagttgcgcgaacagatg
ctggagatgggcttcaaggaatccgccgctaccgcctctcaagcgccatcactggatgct
gacgcctacgaaaagatccaccgcgccctgctggccggcctgctcggcaacatcggtttc
cgcgaggccgagcgcgagttccagggcgcgcgcaacagccgcttcctgatccatccgagt
tccgccctgttcgccaagccgccgaaatgggtgatggtcgccgagcgggtcgagaccacg
cgccggtacggacgcatcgccgccgccgtccagccgggctggatcgagcgcgccgccggc
catctgctccagcgcagttattccgaaccgcactggcaggccaagtccggtcaggtcgcg
gccttcgagaaggtcacgctcttcggcgtcaccctggtgcccaaacggcgcgtcaactat
ggcccgatcaacccggccgaggcgcgcgagatctttctgcgctttgcgctcaccgagggc
gatttcgacacccgcgcacccttctggcgtcacaaccgcgagctgatcgagtacgtccgg
catctggagtccaagtcgcgccggcgcgatatcctggtcgatgaggaagccatctacgcc
ttctatgccgagcgggtaccggcggggatctactcgacgcctcagttcgagcgctggctg
cgtcaggtcacgcgccggacgcccaggatcctgcatatgcggctgagcgatctcatgcgc
catgaggcgtcggagatcagtgcgcagtccttccccgatcagctccaggtgggcgccacc
gcactgccgctcgaataccgcttcgagccgggcgcggcggccgatggcgtgactctggtg
gtgccgctgccgctgatcaatcaggtctcgcccgaccggctcgactggctggtgcctggg
ctgatcgaggagcgcatcacggccctgctgcgcggtctgcccaagacgctgcgcaaggcg
ttcgtgccgatcccggacacggccaagcggctggcggcgcggctggtaccgtccgaccgg
ccgctgatccaggcgctggccgaggagatccgggccatgagcggcgtccggatcccggaa
gacgcctgggatcagtcggtgatcccgccgcatctgcgcatgaagatccggctggtcgac
gagtcggggcaggcgctggccgtgggcgacgatccgctggcgctcaagcggcggttcgcg
gcgcagggtgctcaggggttcacccggattccgagtgccgcccccgctctggagcgcgag
ggggtgacacgctggaccttcggcgacctacccgagtcggtggatctgacgcgcgccggg
atcaagctacgcggctatccggcgctggtcgatcagggcgagagcgtggcgatccgggtg
ctcgactcgacggagaatgcggcggccgcgcatcgggcgggactgcggcggctcatcatg
ctgcatctgggggccgatattcgccaactgcgtaagcaactgccggatctggatcggatg
cggttgcaatatgccaaggcgccgatgccgacgactcagcccgccgatctggccgatgag
ctgatcgcgctcatcctggatctgaccttcatcgaagatcagctgccgatccgcgcccaa
gctgtcttcgagcagcgtctggccgtctgcaagcctcagctttttccgacggccaacacg
gtctgccggctcatcgggacgatcctgggcgaataccaggcactgcgcaaacgtctggcc
agcatcaaccaggtcaactggatgccctccgtgctcgacatccgcgatcagctcgacgca
ctggtgttccggggttttccgcagaccatcccctatgtccatctcaaggagtatccgcgc
tatctcaaggcgatcggacagcgcatcgagcgtctggcccatgcgcccgatcgcgaccga
cgctggatgagcgagatggccggaatccagtcacgctggcgcgaacgcgagacggcggcg
cgcgcggccggtcgtcaggatccgcgtctggacgagatccgctggctattggaggaattg
cgcgtctcgctcttcgcccagcagcttggcaccgcctgtccggtgtcggtcaaacgcatc
gaggcgcgttggaaggagctggggctgtga
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