Allochromatium tepidum: Atep_27270
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Entry
Atep_27270 CDS
T07447
Symbol
pcnB
Name
(GenBank) poly(A) polymerase I
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
atep
Allochromatium tepidum
Pathway
atep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Atep_27270 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atep03019
]
Atep_27270 (pcnB)
Enzymes [BR:
atep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
Atep_27270 (pcnB)
Messenger RNA biogenesis [BR:
atep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Atep_27270 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
BCU08050
LinkDB
All DBs
Position
complement(2922348..2923685)
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AA seq
445 aa
AA seq
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MQDSDPHSAPIRPGQPLVVPRPEHNISRANISEQALRVLYRLRQENFQAHLVGGGVRDLL
LGHEPKDFDVATDATPEQVRQVFRNCRLIGRRFRLAHVHFGRDIIEVATFRGSGSDDGDD
ADRQVRDGLIVRDNVYGTIEEDALRRDFTINALYYDIADFALIDYAGGLDDLRAGRLRLI
GDPVKRYREDPVRMLRAVRFACKLGFTIEPATEQPLFELGRLLRDIPAARLFDELLKLFH
SGYGVEVFEKLRHYGLFGHLFPATEACLAREDHDFPITFVSRGLANTDKRLAEDKPVTPA
FLYAILLWEPVRRRWEELVAHGMTSIEAILRASSEVCVDQQPLVAIPKRFSLPMREIWAL
QPRLEQRDGKRPYRLITHPRFRAAYDFLVLRAEAGEADSELADWWTRFQYAGSQERARMT
EPGARRKRRPRRRRKPSGSSGESAG
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgcaggattccgaccctcattccgctccgatccgtcccggccaaccccttgtggtgccg
cgtccggagcacaacatctcgcgcgccaatatcagcgagcaggcgctgcgcgtgctctat
cgactccggcaggagaacttccaggcccacctggtgggcggcggggtgcgcgatctgctc
ctgggccatgagcccaaggacttcgacgtcgccaccgacgccacgcccgaacaggtgcgg
caggtgtttcgcaactgtcgcctgatcgggcgccgtttccgcttggcgcatgtgcatttc
gggcgcgacatcatcgaggtcgcgaccttccgcggcagcggctcggacgacggtgacgac
gccgatcgccaggtgcgcgacggtctgatcgtgcgcgacaacgtctacggcaccatcgag
gaagatgcgttgcggcgcgacttcaccatcaacgcgctctattacgacatcgccgatttc
gccctgatcgactatgcgggcggactggacgatctgcgcgccggtcgactgcggctgatc
ggcgatccggtcaagcgctatcgcgaggatccggtgcggatgttgcgtgcggtgcggttc
gcctgcaagttgggctttacgatcgagccggcgaccgagcagccgctgttcgagctgggc
cggctgttgcgcgacatcccggccgcgcggctgttcgacgagctgctcaagctgttccac
tccggctatggggtggaggtattcgaaaagctgcgtcactacggactcttcggccatctg
ttcccggcgaccgaagcctgtctggcgcgtgaggatcacgacttcccgatcaccttcgtc
agtcgcggtctggccaacaccgacaagcgtctggccgaggacaagccggtcacgccggcc
tttctctatgccatcctgctgtgggagccggtgcggcggcgctgggaggaactggtcgcg
catgggatgacgtccatcgaggcgatcctgcgggcgtcctccgaggtctgtgtcgatcaa
caaccgctggtggccatccccaagcgcttctcgctgccgatgcgcgagatctgggccttg
cagccgcgtctggagcagcgcgacggcaagcggccctatcggctcatcacccatccgcgt
ttccgtgcggcctatgacttcctggtgctgcgcgccgaggccggcgaggccgattccgag
ctggccgactggtggacgcgcttccagtatgccggcagccaggaacgcgcgcgcatgacc
gagccgggcgcgcgtcgcaagcgccgtccgcgccgccgtcgcaagccgtccggttcgagc
ggcgagtccgccggctga
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