Aquincola tertiaricarbonis: MW290_23980
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Entry
MW290_23980 CDS
T08158
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ater
Aquincola tertiaricarbonis
Brite
KEGG Orthology (KO) [BR:
ater00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ater03019
]
MW290_23980 (hrpA)
Enzymes [BR:
ater01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MW290_23980 (hrpA)
Messenger RNA biogenesis [BR:
ater03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MW290_23980 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
AAA_22
HA2_C
NACHT
HA2_N
AAA_19
nSTAND3
T2SSE
AAA_25
SLFN-g3_helicase
SRP54
Cas3-like_C_2
AAA_17
TsaE
Motif
Other DBs
NCBI-ProteinID:
URI08642
LinkDB
All DBs
Position
2:complement(2098871..2102824)
Genome browser
AA seq
1317 aa
AA seq
DB search
MSSVPTPAAGAAALAIHFPESLPVSARREEIARLIAEHQVVIVCGETGSGKTTQLPKIVL
ELGRGKVNGGKLVGHTQPRRIAASSVAKRIAEELKTPLGEVVGYKVRFQDRLQPGASVKL
MTDGILLAETQTDPLLRAYDTLIIDEAHERSLNIDFMLGHLRQILPRRPDLKIIVTSATI
DAERFANHFAGRSGPAPVIMVSGRLFPVEQRWRPFEESREYGLNDAIVDAVDELWSGRIG
GDILVFLPGEREIREAADHLRKHLAHQPAHRHADILSLFARLSQQEQDRVFSTGGAPRIV
LATNVAETSLTVPGIRFVIDAGLARVKRYSYRNKVEQLQIEPVSQAAANQRAGRCGRVAD
GVCIRLYDEADFNARPRFTDPEILRSSLAGVILRMKSLKLGDVEDFPFLEAPPRKAIADG
YALLGELGAVDDNNALTPIGQELSRLPLDPRVGRMILEARERQSLAEVLVIASALSGQDV
RDRPLEAAQAADEKHKKFDDEKSEFMGYLKLWKWIEEGRGVHGHAGSEAPVDTPKLSNRQ
QEQRLRDSFVSPRRVREWRDIHSQLLTVVREHNWRVNTQPATYEQVHMAMLAGLLGNIGL
KSEDDDWYLGARGIKFWKHPGAHLSKKPGRWLVAAELVETTRLFGRGLAAIEPAWIERIA
GHLLKKQLLEPHWEKKAGEVVALERATLYGIVVYNNRRVNYGTVDPAGAREIFIREGLVQ
DEWETRLPFLAHNRKLIRQVEELEHKARRQDVLVDDDLIFAFYDQQLPADVHSGPALERW
FRHASKAQPELLKLTREELMRHEAAGITTAAFPKVVRLGGVDCAATYLHDPGDAKDGVTV
TVPIYALNQVSDERCEWLVPGMLKDKVLALVKSLHQRPRSRLVPLPDYAAEFVETTPFAQ
GGLVDALLKAVRDRTQLAVQRNDFKLETLPPHLFMNFRVVDEHGRQLGMGRNLASLKAEL
GGQARSAFQALAGLKLAGQEAAAQVATQAGPGGGAAAGRGPQRVPGRGEAPAPSARGGRD
GAAPSDARASDSAKPAATYTSWTFGELPELMEIRKAGQTLVGFPALIDKRSHVEIEVFDE
PDVAAAKHRAGLRRLVALAIKEPLKYLEKNIPDLRQMAVWFMPLGTQEELRDQIIDVALD
RAFLADPLPTDARAFQARVDEGRARLNLIAQEVARMAGTVLAEHAAALRKLKDSRPPKDV
ADDITAQLQRLVGKRFLLDTPWAALAHLPRYLKAVVLRLDKLRADPARDAQRLAELRPLE
QRYLRRVAELKGTTDARLAEYRWLLEELRVSLFAQELRTPQPVSAKRLDKAWAQLSS
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgagttcagtccccacccctgccgccggcgccgccgcgctggccatccacttccccgaa
tccctgccggtctcggcccgccgcgaggaaatcgcgcgcctgatcgccgagcatcaggtg
gtcatcgtctgcggcgaaaccggctcgggcaagaccacgcagttgcccaagatcgtgctg
gagctgggccgcggcaaggtcaacggcggcaagctcgtcggccacacgcagccgcggcgc
atcgccgccagcagcgtggccaagcgcatcgccgaagagctgaagacgccgctgggcgag
gtggtgggctacaaggtgcgcttccaggaccggctgcagcccggcgccagcgtcaagctg
atgaccgacggcatcctgctggccgagacacagaccgacccgctgctgcgcgcctacgac
acgctgatcatcgacgaggcgcacgagcgcagcctcaacatcgacttcatgctgggacac
ctgcggcagatcctgccgcgccggcccgacctgaagatcatcgtcacctcggccaccatc
gatgcggagcggtttgccaaccactttgcgggccgcagcggccccgccccagtcatcatg
gtttcgggccgcttgttcccggtggagcagcgctggcggccgttcgaggaaagccgcgag
tacggcctcaacgacgccatcgtcgatgcggtcgatgagctgtggtcgggccgcatcggc
ggcgacatcctcgtcttcctgcccggcgagcgcgagatccgcgaggccgccgaccacctg
cgcaagcacctggcccaccagccggcgcaccggcatgccgacatcctgtcgctgttcgcg
cgcctgtcgcagcaggagcaggaccgggtgttctccaccggcggcgcgccgcgcatcgtg
ctggccaccaacgtggccgaaacctcgctgacggtgccgggcatccgcttcgtcatcgac
gccggcctggcccgcgtcaagcgctacagctaccgcaacaaggtcgagcagctgcagatc
gagccggtgagccaggccgccgccaaccaacgcgcgggccgctgcggccgcgtggccgat
ggcgtgtgcatccgcctctacgacgaggccgatttcaacgcccgcccgcgtttcaccgac
cccgagatcctgcgttcgtcgctggccggggtgatcctgcgcatgaagtcgctgaagctg
ggcgacgtggaggactttccgttcctggaagcgccgccccgcaaggcgattgccgatggc
tatgccttgctgggtgagctgggcgcggtggacgacaacaacgcgctcacgcccatcggc
caggagctgtcgcgcctgccgctggacccgcgcgtgggccgcatgatcctggaggcgcgc
gagcgccagtcgctggccgaggtgctggtgatcgccagcgcgctcagcggccaggacgtg
cgcgaccggccgctggaagccgcccaggcggccgacgagaagcacaagaagttcgacgac
gagaagtcggagttcatgggctacctcaagctgtggaagtggatcgaagaaggccgcggc
gtgcacggccacgccggcagcgaggcgccggtggacacgcccaagctcagcaaccgccag
caggagcagcggctgcgcgacagcttcgtgtcgccgcggcgggtgcgcgagtggcgcgac
atccattcgcaattgctcaccgtggtgcgcgagcacaactggcgcgtcaacacccagccc
gccacctatgagcaggtgcacatggccatgctggccggcctgctgggcaacatcggcctc
aagagcgaagacgacgactggtacttgggtgcgcgcggcatcaagttctggaagcaccct
ggagcccacctgagcaagaagcccggccgctggctggtggccgccgagctggtggagacc
acgcgcctcttcggccgcggcctggcggcgatcgagcctgcctggatcgagcgcatcgcc
ggccacctgctcaagaagcagctgctggagccgcactgggagaagaaggccggcgaagtg
gtggcgctggagcgggccacgctgtacggcatcgtggtctacaacaaccggcgcgtgaac
tacggcacggtggacccggccggcgcgcgcgagatcttcatccgcgaaggcctggtgcag
gacgagtgggagacgcggctgcccttcctggcgcacaaccgcaagctcatccgccaggtg
gaagagctggagcacaaggcccgccgccaggacgtgctggtggacgacgacctgatcttt
gcgttctacgaccagcagctgcccgccgacgtgcacagcggcccggcgctggagcgctgg
ttccgccacgccagcaaggcgcagcccgagctgctgaagctgacgcgcgaggagctgatg
cggcacgaggccgccggcatcaccaccgcggcctttcccaaggtggtgcggctgggcggc
gtggactgcgccgccacctacctgcacgaccccggtgatgccaaggacggcgtgaccgtg
accgtgcccatttatgcgctcaaccaggtgagcgacgagcgctgcgaatggttggtgccc
ggcatgctgaaggacaaggtgctggcgctggtgaaaagcctgcaccagcgcccgcgctcg
cgcctggtgccgctgcccgactatgcggccgagttcgtcgagaccacgcccttcgcccag
ggcggcctggtggatgcgctgctgaaagcggtgcgcgaccgcacccagctggcggtgcag
cgcaacgacttcaagctggaaacgctgccgccccacctgttcatgaactttcgcgtggtg
gacgagcatggccgccagctgggcatgggccgcaacctggcctcgctgaaggcggagctg
gggggtcaggcccgctccgccttccaggcgctggcggggctgaagctggcgggccaggaa
gccgctgcgcaagtcgcgactcaagccgggccgggcggcggcgcggctgcgggccgtggg
ccgcagcgcgtgcccggccgtggcgaggcgcccgcgccaagcgcccgcggcggccgtgac
ggcgccgccccttcggacgcccgcgcttctgattcggccaagcccgccgccacctacacc
agctggaccttcggcgagctgcccgagctgatggagatccgcaaggccggccagacgctg
gtgggctttccggcgctgatcgacaagcgcagccatgtcgagatcgaggtgttcgacgag
ccggacgtggccgccgccaagcaccgcgccggcctgcgccggctggtggccctggccatc
aaggaaccgctgaagtacctggaaaagaacatccccgacctgcgccagatggcggtgtgg
ttcatgccgctgggcacgcaggaagagctgcgcgaccagatcatcgacgtggcccttgac
cgggctttcctggccgacccgctgcccaccgatgcccgcgccttccaggcccgggtggac
gaaggccgggcgcggttgaacctgattgcgcaggaagtggcgcgcatggcgggcaccgta
ctggccgagcatgcggccgcgctgcgcaagctcaaggacagccggccgcccaaggacgtg
gccgacgacatcacggcgcagctgcagcgcctggtgggcaagcgctttttgctggacacg
ccctgggccgcgctggcgcacctgccgcgctacctgaaggcggtggtgctgcggctggac
aagctgcgcgccgaccccgcccgcgatgcccagcgcctggccgagctacggccgctggag
cagcgctacttgcgccgcgtggccgaactcaagggcaccaccgatgcccgcctggccgag
taccgctggctgctggaagagctgcgcgtgagcctgttcgcgcaggagctgcgcacgccg
cagccggtgagcgccaagcgcctggacaaggcctgggcgcagctcagcagctga
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