Agrobacterium tumefaciens Ach5: Ach5_00530
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Entry
Ach5_00530 CDS
T03816
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
atf
Agrobacterium tumefaciens Ach5
Pathway
atf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ach5_00530 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atf03019
]
Ach5_00530 (recQ)
03400 DNA repair and recombination proteins [BR:
atf03400
]
Ach5_00530 (recQ)
Enzymes [BR:
atf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ach5_00530 (recQ)
Messenger RNA biogenesis [BR:
atf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ach5_00530 (recQ)
DNA repair and recombination proteins [BR:
atf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ach5_00530 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKC05835
LinkDB
All DBs
Position
circular:63616..65424
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AA seq
602 aa
AA seq
DB search
MTTDPLQILKTVYGYDTFRGQQAEIIRHVMAGNNAFVLMPTGGGKSLCYQIPALARKGMG
LVVSPLIALMVDQVAALRQAGVRAEALNSDLSPEERRILWQDMRAGKVDILYAAPETLLK
PDVLDALQPISLSLIAIDEAHCLSQWGHDFRPPYRQLDTLIERFPDTPRMALTATADEPT
RAEILGHLGINGSDAFIAGFDRPNIRYAIMEKDNPRTQLKRFLTGREDESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREANQTHFQHGEAVIMVATVAFGMGIDKPDVRFV
VHIDLPSSIEAYYQETGRAGRDGLPSDVLMLYGYEDIALRNRFIEESDAGDQRKNMERRK
LDALLGLAETAGCRRRVLLSYFGDHCEPCGNCDTCAEPPDLFDGAIAAQKLLSCIYRTGE
RFGQAYVIRVLLGMEDERISNFGHDRITTYGIGKEHDNRTWRAILRQMVALRLIEVDLAG
HGGLSISEEGRRFLREKPSLMLRIPSAPRSARQQTNRKPTAIVLPDADRSLFEALRAKRM
EIARAQNVPPYVIFHDKTLIELAASRPASVGEMAQIPGVGDTKLERYGPAFLAAIMEHAA
SE
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccgatcccttgcagattctcaagaccgtgtatggctacgatacgtttcgtgga
cagcaggccgaaatcatccggcatgtgatggcaggcaacaatgcatttgtattgatgcca
acagggggcgggaagtcgctttgttaccagattccggcgctcgcccgtaagggaatgggg
ctggttgtttcgcccctgatcgcgctgatggttgatcaggtcgccgccttgcgtcaggca
ggtgtgcgggcagaagctctcaactccgatctttccccagaagagcggcggatactctgg
caggatatgcgggctggcaaggtcgatattctctatgccgcgccggagacccttctcaag
ccggatgttctggatgcgcttcaacctatcagcctgtcgctgatcgccatcgacgaagct
cattgcctgtcgcagtgggggcacgatttccgtcccccttaccgccagctagacacgttg
atcgagcgctttccggatacgccacgcatggcgctcacggcgactgcggacgagccaacc
cgcgccgaaattctgggtcatctcgggatcaacggaagcgacgccttcatagccggattc
gatcggccaaatatccgctatgcgatcatggaaaaggataatccacgtacgcagctgaag
cgcttcctgacgggtcgcgaggacgaaagcggcatcgtctattgcctttccaaacgcaag
gtagatgagacggcggcctggctgcgtgaggaggggcgcgatgcgctgccctatcacgcc
ggcatggacaaggccgcccgcgaggcgaaccagacccacttccagcatggtgaagctgtc
atcatggttgcaaccgtggctttcggtatgggcatcgacaaaccggatgtgcgcttcgtt
gtgcatatcgatctgcccagcagcatcgaagcctattatcaggaaaccggccgtgccggc
cgtgacggtctgccgtccgacgtgcttatgctttacggttatgaagacatcgcattgcgc
aaccgctttatcgaagagtcggatgcgggcgaccagcgcaagaacatggagcgccggaag
ctcgatgcgttgcttggcctcgcggaaacagccggttgccgtcggcgggtgcttttgtct
tatttcggcgaccattgtgagccctgcggcaattgcgacacctgtgcggagccgccggac
ctgtttgatggtgccattgccgcgcagaagttgctgtcctgcatttaccgcacgggagaa
cgtttcggccaggcctatgtcatccgcgtattgctgggcatggaagatgaacggatatcg
aactttggtcacgatcggatcacgacctacggcatcggcaaagagcacgacaatcgcacc
tggcgggccatcctgcgccagatggttgcgctgcgcctgatcgaggttgatctggccggt
cacgggggattgtccatttccgaagaagggaggcggttcctgcgcgaaaagccgtccctg
atgttgaggataccgtccgctccccgttcggcgcgacaacagacgaatcgcaagcccacc
gccattgttctaccggatgccgatcgtagtctctttgaggcgctgcgtgcgaagcgcatg
gaaattgcccgcgcacagaacgttccgccctatgtgatttttcacgacaagacactcatt
gagcttgcggcatcaagaccggcctctgtgggggaaatggcgcagatacctggagtggga
gacacaaagctggaacgatacggccctgcttttctggcggcgatcatggaacatgccgcc
agcgagtga
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