Agrobacterium tumefaciens Ach5: Ach5_11870
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Entry
Ach5_11870 CDS
T03816
Name
(GenBank) beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
atf
Agrobacterium tumefaciens Ach5
Pathway
atf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ach5_11870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atf03019
]
Ach5_11870
Messenger RNA biogenesis [BR:
atf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ach5_11870
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Regulator_TrmB
Motif
Other DBs
NCBI-ProteinID:
AKC06963
UniProt:
A0A1B9U997
LinkDB
All DBs
Position
circular:1217879..1219546
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AA seq
555 aa
AA seq
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MTKQDELVFLPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGLDLPGVDLVLPDIS
YIAEQKKNLKGIIITHAHEDHYGALNDLWPGLNVPVYASGFTAGMLEAKRAYEGSRAEIP
ITPFKAGDRINVGPFEIEAVGVNHSIPEPMSLVIRTPLGNVIHTGDWKIDEAPSLGPLTD
EARFRAIGEEGVLALMCDSTNSLRDGVSPSEHEVSEGLRQIIENAEGRVAITTFSSNVGR
IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRNKVVVILT
GSQGEPRAALAKLSRDEMRNVALAAGDTVVFSSRAIPGNEKAIIEIKNGLIEQGIHIVTD
NEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVAQKELAEQAGISQVPKVRNGN
ILRLAPGPAEVINDAPHGRVFKDGNLIGDLDEMGISNRRKLSFAGHVSVNVLLDSRYDFL
GDPDVVPFGLPEFDDEGEDMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQ
AWGKKPIVTVFVTKV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgactaaacaggacgaactggtatttctgccgcttggcggcgtcggtgaaatcggcatg
aatctggcgctgtacggctacggtccggaaagcaagcgccaatggatcatggtggattgc
ggcgttacctttgccggcctcgatctgcctggtgtcgatctggttctccccgatatcagc
tatatcgccgagcagaagaagaacctcaaaggcatcatcatcacccacgcccatgaggat
cactacggcgcgctgaacgatctgtggccgggcctcaacgtgcccgtctatgcctcgggt
ttcaccgccggaatgctggaggcaaagcgcgcctacgagggcagtcgtgccgaaattcca
atcaccccgttcaaggcgggtgatcgcatcaatgtcggcccgttcgaaatcgaggccgtc
ggcgtcaaccattcgatccccgaaccgatgtcgctggtcatccgcacgccgcttggcaat
gtcatccacacgggcgactggaagattgacgaggcgccgtctctcggtccgttgacggat
gaggcgcgtttccgcgccatcggcgaggagggcgtgctggcgttgatgtgcgacagcacc
aactcgctgcgcgacggcgtatcgccttcggagcacgaagtatctgaggggctgcgccag
atcattgaaaatgccgagggtcgcgtggccatcaccaccttctcctccaatgtcggccgt
atccgctccatcgcgcaggctgcggaagctgccggacgcgaagtgctgctgctcggctcg
tcgctgaagcgcgtcgtcaacgtttcgcaggatctcggcatcatggaaggtatcaagccg
ttcctggctgaagacgaatacggctatattccgcgcaacaaggtggtcgtcattctcacc
ggttcgcagggcgagccgcgggcagcccttgccaagctttcgcgcgatgagatgcgtaat
gtggcgctggctgccggtgatacggtggtattttcctcgcgcgccattccgggcaacgaa
aaggcgatcatcgagatcaagaacggcctgatagagcagggcatccatatcgttaccgac
aatgaggctttggtgcatgtctccggccatccccgccgtaacgaacttctgaggatgtac
gaatggaccaagccgcaaatcctggtgccggtgcatggcgaggcggcgcatctggtcgcg
cagaaggaactggccgaacaggccggcatttcgcaggtgccgaaggttcgtaacggcaac
attctgcgtctggcgcctggtcctgcggaagtcatcaacgacgcaccgcacggccgcgtc
ttcaaggacggcaacctcatcggtgacctcgacgagatggggatcagcaaccgccgcaag
ctttccttcgccggccatgtctccgtcaatgtgctgctggacagccgctacgacttcctc
ggagatcccgatgtcgtaccttttggcctgccggaattcgatgatgagggcgaggacatg
gaagatacgctctatgacgccgtactcggcgccgtggaaagcatcccccgtgcccgccgc
aaggaccttgcgctgctgcgcgagtcagtgcgccgcgccgtacgcgccgctgccaatcag
gcatggggcaagaagccgatcgtgacggttttcgtcaccaaggtctga
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