Agrobacterium tumefaciens Ach5: Ach5_18630
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Entry
Ach5_18630 CDS
T03816
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
atf
Agrobacterium tumefaciens Ach5
Pathway
atf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
atf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ach5_18630 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atf03021
]
Ach5_18630 (rpoC)
03400 DNA repair and recombination proteins [BR:
atf03400
]
Ach5_18630 (rpoC)
Enzymes [BR:
atf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ach5_18630 (rpoC)
Transcription machinery [BR:
atf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ach5_18630 (rpoC)
DNA repair and recombination proteins [BR:
atf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ach5_18630 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AKC07639
UniProt:
A0A1B9U5D5
LinkDB
All DBs
Position
circular:complement(1896933..1901138)
Genome browser
AA seq
1401 aa
AA seq
DB search
MNQEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSMKQNQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKKFMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALE
NKVVTLHAKIRGRFKTVDADGKPVSKIHETTPGRMLIGELLPKNVNVPFDVCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPDSKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDPETGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMTAIVDAGQVVASLGARILGRT
ALDDIDNPVTGENIVKARTLIDEADVAIIEKAGIQSVRIRSALTCEVQVGVCGVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDQSFLEASYEGTIQIKNRN
ILRNSDGVLIAMGRNMSVTILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYT
RPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIIIKDASG
AVAKLSRGGEARFHLSVDAILSVEPGSKVFQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAVIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSHYIVGDNVDRIELDDNNDRLIEEGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEERRK
GTGAGSATQMLQDMTDPAPAE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatcctcaggtgcctgcgcagcatttcgattcc
atccggatttcgatcgcttcgccggaaaaaatcctgtcgtggtcctacggcgagatcaag
aagccggaaaccatcaactatcgtacgttcaagccggaacgcgatggtctcttctgcgcg
cgcattttcggacctatcaaggattacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgttgaagttacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgcagcgcccgttgcccatatctggttcctaaagtcg
cttccctcgcgtatctcgaccttgctcgacatgacgctgaaggatgtcgaacgcgttctc
tatttcgagaactacatcgtcaccgaacccggcctcacctcgatgaagcagaaccagctt
ctgtccgaggaagagtacatgatcgccgttgacgagtttggcgaagaccagttcaccgcc
atgatcggcgctgaagccatctacgagatgctggcttcgatgaacctcgaaaagatcgcc
ggcgacctgcgtgccgagcttgccgagaccacctcggatctcaagcagaagaagttcatg
aagcgtctcaagatcgttgagaacttcatggaatccggcaatcgtccggaatggatgatc
atgaaggtcgttccggttattccgccggaccttcgtccgctggttccgctggatggtggc
cgtttcgcgacgtccgacctcaacgatctctatcgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctgatcgagcttcgcgcgcctggtatcatcatccgcaacgaaaagcgtatg
ttgcaggaatccgtcgatgcgctgttcgataacggccgtcgcggtcgcgtcatcacgggt
gcgaacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttc
cgccagaaccttctcggaaagcgcgtcgactattcaggccgttcggtcatcgtgaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctatgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaaaagcctgaagtttgggatatcctcgacgaggtcatccgcgag
catccggtccttctgaaccgcgcaccgacgctgcaccgtctgggtatccaggcgttcgaa
cccatgctggttgaaggcaaggctattcagctgcatccgctcgtctgcacggctttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctgtcgcttgaagcccagctt
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcatccggcaaacggccatccg
atcatcgttccttcgcaggacatggttctcggcctgtattacctgtcgatcatgaaccag
aatgagcccggcgaaggcatggccttctcggacatcggcgaattgcatcacgcgcttgaa
aacaaggtcgtgacgttgcatgccaagatccgtggtcgtttcaagaccgtggatgctgac
ggcaagccggtttccaagatccatgaaacgacgcctggccgtatgctgattggcgaactt
ctgccgaagaacgtcaacgtgccgttcgacgtctgcaaccaggagatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcattgcggccagaaagacacggtcatcttc
tgcgaccggatcatgcagctcggctttgctcacgcttgccgcgccggtatttcgttcggc
aaggacgacatggtcattccggacagcaaggttaagatcgtcggtgacaccgaagccttg
gtgaaggaatacgaacagcagtataacgacggtctcatcacccagggcgaaaagtacaac
aaggttgtcgacgcctggggtaaggcaaccgaaaaggtcgccgaagaaatgatggcgcgc
atcaaggctgtggaattcgacccggaaacgggccgccagaagccgatgaactccatctac
atgatgagccactcgggcgcccgcggttcaccgaaccagatgcgtcagctgggcggcatg
cgcggcctgatggccaagccctcgggtgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgttaacgagtacttcaactcgacccacggtgcccgtaagggtctt
gcagacaccgccttgaagacggcgaactcgggttaccttacccgccgtctcgtcgacgtg
gcacaggattgcatcgtcaactccgtggattgcggcaccgacaagggcctcaccatgacc
gccatcgttgatgccggtcaggtcgttgcctcgctcggcgcacgtatcctcggccgtacg
gctcttgatgacatcgacaatccggtaactggcgagaacatcgtcaaggccagaacgttg
atcgacgaagccgacgttgcaatcatcgagaaggctggcatccagtccgtccgtatccgc
tcggcactgacctgcgaagtgcaggtcggcgtttgcggcgtctgctacggtcgtgacctt
gctcgcggtactccggtcaatatgggcgaagccgttggcgtcatcgccgcacagtcgatc
ggtgaaccgggcacgcagctcaccatgcgtaccttccaccttggcggtacggcaaacgtg
gtcgaccagtcgttcctggaagcttcgtacgaaggcacgatccagatcaagaaccgcaac
atcctgcggaactccgatggcgttctcatcgcaatgggccgtaacatgtcggtcaccatt
ctcgatgagcgcggcgtggaacgttcctcgcagcgtgtcgcttatggttcgaagatcttc
gttgatgacggcgacaaggtaaaacgcggccagcgtcttgcagagtgggacccctacacc
cgtccgatgatgacggaagtggaaggtaccgttcacttcgaggacctcgtcgacggtctt
tccgttctggaagccacggacgaatccaccggcatcaccaagcgtcaggtcattgactgg
cgctcgacgccgcgcggttcggacctcaagcccgcgatcatcatcaaggatgcttccggc
gctgtcgcaaagcttagccgcggtggcgaagctcgcttccacctctccgtggacgcgatc
ctgtcggttgagcctggttcgaaggtcttccagggtgacgtgcttgcacgttcgccgctg
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgaactgttcgaa
gcacgtcgtccgaaggatcatgctgtcatcgctgagatcgatggtacgatccgcctcggt
cgcgactacaagaacaagcgtcgcgtgatgattgagcctgctgaagacggcgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccatcttcaggaaggcgactacatcgag
aagggcgaatacattctcgacggcaatccggcaccgcacgacattctggcaatcaagggc
gtagaggctttggcttcctacctcgtgaacgaaatccaggaagtctaccgactgcagggc
gttgtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgag
atcaccgatgcgggcgacagccactacatcgttggcgacaatgtcgatcgtatcgagctt
gacgacaacaacgaccgcctgatcgaagaaggcaagaagcccgcttatggtgatccggtt
cttctcggtatcaccaaggcatcgctgcagacgccgtccttcatctcggccgcatcgttc
caggaaaccaccaaggttctcacggaagctgcgatcgccggcaagacggatacgctgcag
ggcctcaaggaaaacgtcatcgtcggccgcctcatcccggccggtaccggcggcaccatg
acgcagatccgccgcatcgccacctcgcgcgacgacctcattctcgaggaacgccgcaag
ggtacgggtgcaggctctgcaacacagatgctgcaggacatgacggatccggctccggcc
gaataa
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