Agrobacterium tumefaciens Ach5: Ach5_22090
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Entry
Ach5_22090 CDS
T03816
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
atf
Agrobacterium tumefaciens Ach5
Pathway
atf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ach5_22090 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atf03019
]
Ach5_22090 (rhlE)
Enzymes [BR:
atf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ach5_22090 (rhlE)
Messenger RNA biogenesis [BR:
atf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ach5_22090 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
AAA_19
CMS1
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKC07984
UniProt:
A0AA86FWA5
LinkDB
All DBs
Position
circular:2269133..2270611
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AA seq
492 aa
AA seq
DB search
MTSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPI
IEMLMKQADRPANRTTRTLILAPTRELVNQIGENLRSFVKKTPLRINQVVGGASINKQQL
QLEKGTDVLVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAK
RQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKS
LNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVL
VATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD
IEKLMKIDIPVASGERPAGLASPTRPNNNNRGRNNNGGQPRGPREGGRHNGEPRPSRHHA
PRDADNDLEVTSDFKRVKTAEGDAGRPAGPRKQRRPARKPGGSGGNRHAPAGGNGQEKRA
SGNGNGNRGRNR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagttttagcgaactcggcctctctgaaaagattgtggccagcgttacccagctc
ggctacacaacccccacccccattcaggcaaaggccattccgctgctgcttgaaggccgt
gatctcatcggcctcgcacagaccggcacgggcaaaacggcagcattcggcctgcccatc
atcgaaatgctgatgaagcaagccgaccgcccggcaaaccgcaccacccgcaccctcatc
ctcgcaccgacccgcgaactggtgaaccagatcggcgaaaacctgcgctccttcgtgaag
aagacgccgctgcgcatcaaccaggttgtcggcggcgcgtcgatcaacaagcagcagctt
cagctcgaaaaaggcacggacgtcctggtggcgacacccggccgcctgctggacctcatc
gcccgcaacgcgatctcgctttccaaggtcacctatctggtgcttgatgaagccgaccag
atgctcgatctgggcttcattcacgatctgcgcaagatttccaagatggttccggccaag
cgccagaccctgctgttttcggcaacgatgccgaaggcgatttccgagcttgccagcaac
ttcctgacggacccgatcaaggtcgaggtaacacctccgggcaaggccgccgacaaggtc
gagcagtacgtgcatttcgtcgccggcaagaacgacaagaccgaccttctgaagaagtcg
ctcaacgaaaacccggatggccgctcgatcgttttcctgcgcaccaagcacggcgcggaa
aagctctacaagcatctggaacatatcggcttcaaggtcgcctccatccacggcaacaag
agccagggccagcgcgagcgggcactgaagggcttcaaggacggtgagatcaaggttctg
gtcgcaaccgacgtcgctgcccgcggcatcgatattccggccgtgacgcacgtcttcaac
tacgacctgccggaagtgcccgacgcctatgtccaccgcatcggccgtaccgcccgtgcc
ggccgcgacggcattgccatcgcgttctgcgcaccggacgaaacgcgtttgctgcacgat
atcgaaaagctgatgaagatcgatatcccggttgcatccggtgaacgtccggccggtctt
gccagcccgacgcgcccgaacaacaacaaccgtggtcgcaacaacaatggcggccagccg
cgtggcccccgcgaaggcggacgccacaatggcgagccccgtccctcgcgtcaccacgcc
ccgcgtgatgcggacaacgatctggaagtcacgtcagactttaagcgcgtgaagacggcg
gaaggtgacgcaggtcgcccggccggccctcgcaagcagcgccgccctgcccgcaagccc
ggcggcagcggtggcaaccgtcacgcacctgctggcggcaacggccaggaaaagcgcgct
tccggcaacggaaacggcaatcgcggccgtaaccgctaa
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