Agrobacterium tumefaciens Ach5: Ach5_38170
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Entry
Ach5_38170 CDS
T03816
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
atf
Agrobacterium tumefaciens Ach5
Brite
KEGG Orthology (KO) [BR:
atf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atf03032
]
Ach5_38170 (topA)
03400 DNA repair and recombination proteins [BR:
atf03400
]
Ach5_38170 (topA)
Enzymes [BR:
atf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Ach5_38170 (topA)
DNA replication proteins [BR:
atf03032
]
Prokaryotic type
DNA Topoisomerases
Ach5_38170 (topA)
DNA repair and recombination proteins [BR:
atf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Ach5_38170 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AKC09590
LinkDB
All DBs
Position
linear:complement(1228829..1229845)
Genome browser
AA seq
338 aa
AA seq
DB search
MPQPPTRLLAKIGLAYVNDQEPGIARERRGRGFCYRLPGGELLSDNVELKRIKSLGVPPA
YKDVWICIDPSGHLQATGFDARGRKQYRYHPDWHALRGETKFFQLKSFGKALPAIRRRAM
ADIAKQDHGQDMTLAALTLLLDAAYLRVGNRSYLETNGTYGATTLLKRHVSFGETIELRF
AAKGGQKVKRQLRHPRLQKILEEIADLPGKELFVWQDSENRVHSVDSSDLNAYLSRIGGQ
GISAKTFRTWGGTLAAFCHAMEHVAAGEKPSIKGMCQAAATELSNTPAICRKSYVHPTVL
DIATEEKAQKKLGRILKVRAKPVSGLRADERRLLAFLP
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgccacaaccgcccacccgccttcttgccaaaatcggacttgcctatgtcaacgatcag
gagccgggcatagcccgagaaaggcgcgggcgcggtttctgttaccggttgccgggcggc
gaacttctgtccgataacgtggagttgaagcgcatcaaatcgctcggcgtcccgcctgcc
tacaaagatgtctggatatgcatcgacccatccgggcatttgcaggcaacgggctttgat
gcgcgcgggcgaaagcaatatcgttaccatcccgactggcacgcattgcgcggtgagacg
aagttctttcagctgaaaagcttcggcaaggcgctgcctgccatccggcgacgcgccatg
gctgacattgcaaaacaggatcacggtcaggacatgacactggcggccctgacgctgctt
ctcgatgccgcctatctgcgcgtcggcaaccgttcttatcttgaaaccaacggtacctat
ggcgcaaccacattgctcaagcgccacgtgtccttcggcgagacaatcgaattgcgcttt
gcagccaagggcgggcagaaggtgaaacggcaattgcgccacccgcgccttcaaaaaatc
ctcgaggaaatcgccgatctgcccggcaaggagctgtttgtctggcaggacagtgaaaac
cgggttcactccgtcgattcaagcgatctcaacgcctatctttcccgcatcggcggacaa
ggcatttctgccaagactttccgtacctggggcggaacgcttgcggccttctgtcatgcg
atggaacatgtggctgcgggtgaaaaacccagcatcaagggtatgtgtcaggcagcggcg
acggaactgtccaacacacccgccatttgccgcaagagctacgtacatcctaccgttctc
gatatagcgacggaggagaaggcgcagaagaagcttggccgtattctgaaggtgcgcgca
aagccggtctcgggcctcagggccgatgaaagacgtctgcttgccttcctgccgtga
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