Agrobacterium tumefaciens Ach5: Ach5_39430
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Entry
Ach5_39430 CDS
T03816
Symbol
deaD
Name
(GenBank) cold-shock dead-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
atf
Agrobacterium tumefaciens Ach5
Pathway
atf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ach5_39430 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atf03019
]
Ach5_39430 (deaD)
03009 Ribosome biogenesis [BR:
atf03009
]
Ach5_39430 (deaD)
Enzymes [BR:
atf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ach5_39430 (deaD)
Messenger RNA biogenesis [BR:
atf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ach5_39430 (deaD)
Ribosome biogenesis [BR:
atf03009
]
Prokaryotic type
rRNA helicases
Ach5_39430 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Pan_kinase
CMS1
WHIM1
SBF_like
Motif
Other DBs
NCBI-ProteinID:
AKC09716
UniProt:
A0A1V2ALR9
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All DBs
Position
linear:complement(1366577..1368424)
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AA seq
615 aa
AA seq
DB search
MTDTQGIAPAIAQALEKRGYKDLTPVQKAMLSPELADKDALVSAQTGSGKTVAFGIALAT
TLLSENTRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRSERRA
LERGAHIIVGTPGRLCDHIKRGALDLSSLRAVVLDEADEMLDLGFREDLEFILEESPDNR
RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVTGSDRENAIINALR
FYEARNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVA
TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVNQRRKAERLL
EGAKVSAAWVRPPSVEEIVERDGARLLADPALTEAVADDERDFVKQLLEQHGAEKVAAAF
VRLYHAGRSAPEDITEVALDNTRKPRRDSFETPENDAPRRERSDFSDSAWFSLSVGRKQS
AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMMLEKGIRLK
ALEGKPEMTGSVREDTRPATAQRKFNKPNNAGGAADDRKGDDKPWKKKKTFGDKPKFEGK
KDRPFEKRGPKPAKG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacccagggtatcgccccggcgatcgcgcaggcgttggaaaaacgcggctac
aaagatttgacccccgtgcagaaggccatgctttcgccggaactcgccgacaaggacgcg
ctggtttccgcgcagaccggctccggcaagacagttgccttcggcattgcgctcgcgacc
acgctactgtcggaaaacacccgtttcggccaggcttccgcgccgctggcactcgccatt
gcgcctacccgcgaactggccatgcaggtcaagcgcgagctggaatggctttatgaattc
gccggcgtatcgattgcgtcctgtgttggcggcatggatatccgcagcgaacgacgcgca
ctggagcgcggcgcgcatattatcgtcggcacccccggccgcctctgcgaccacatcaag
cgcggcgcgctcgatctgtcgtcgctacgcgccgtggtactggacgaggccgacgagatg
ctcgatctcggcttccgcgaagatctggaattcattctggaagaatcgccggataaccgc
cgcacgctgatgttctcggccaccgtcccgcgcagcatcgccaagcttgccgaaagctac
cagaagaacgccgttcgcatcgccaccgcctcagaacagaagcagcatgtggacatcgaa
taccgcgccttgctggtgaccggctccgaccgcgaaaacgccatcatcaatgcgctgcgc
ttttacgaagcccgcaacgccatcgttttctgctccacccgtgcggccgtgaaccatctg
acggcccgtctgaacaatcgcggcttttccgtcgtggctctgtcaggcgaactgacccag
aacgaacgcacgcatgcgcttcaggcaatgcgtgacggtcgcgcccgggtttgcgtggcg
actgacgttgctgcacgcggcatcgacctgcctggtctcgaactggttatccacgccgac
ctgccgaccaattcggaaacgcttctccaccgttccggccgtaccggccgcgccgggcag
aagggcgtcagcgccatcgtggtgcctgtcaaccagcgccgcaaggccgaacgccttctg
gaaggtgccaaggtcagcgcagcatgggttcgcccgccttcggtcgaagagatcgttgaa
cgcgacggtgcccgtctcctggccgatccggctctcaccgaggccgtggccgatgacgag
cgtgatttcgtcaagcagctgctcgagcagcatggcgcggaaaaagtagcagccgccttc
gtgcgcctttatcacgccggacgttccgccccggaagacatcaccgaagtcgcgctggac
aatacccgcaaaccgcgccgtgacagcttcgaaacccctgaaaacgacgcgccgcgccgc
gaacgttccgacttttccgacagcgcttggttttcgctttcggtgggccgcaagcagagc
gccgaaccgcgctggctcatccccatgctctgccgcttcggcaagatcacccgtcaggat
atcggcgctatccgcatgcagcagacggagacctttgtggaactcgcggccgatgccgtc
gatcgtttcacctccgccatcggcaaggacatgatgcttgaaaagggcattcgtctgaag
gcgctggaaggcaagccggaaatgaccggcagtgttcgtgaggacactcgcccggccacg
gctcagcggaagttcaacaaacccaataatgctggcggcgcagccgacgaccgcaagggc
gacgacaagccctggaaaaagaaaaagaccttcggcgacaagcccaaattcgaaggcaag
aaggaccggcctttcgaaaagcgcggaccgaagccggcaaagggctga
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