Agrobacterium tumefaciens Ach5: Ach5_47380
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Entry
Ach5_47380 CDS
T03816
Name
(GenBank) ABC transporter substrate-binding protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
atf
Agrobacterium tumefaciens Ach5
Pathway
atf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
atf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Ach5_47380
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
atf02000
]
Ach5_47380
Transporters [BR:
atf02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
Ach5_47380
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_1
SBP_bac_6
SBP_bac_11
Gp44-like_2nd
DUF7623
Motif
Other DBs
NCBI-ProteinID:
AKC10505
LinkDB
All DBs
Position
pAt:148880..149920
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AA seq
346 aa
AA seq
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MKYRFSMLVLSASAAVFSADLASAEQVTFVSQGGAYQEAQTKAILDPVAKLLGITVNQDS
APDAWPVIKTQSASGKIVWDVIDTPAKDCIRGGEQGMIEKLDFSKIPNAEKMPAEYKSPY
SVAYEFYSSVLAYNKDKFGGNPPKSWSDFWDVKKFPGTRALRNHPLATLEAALLADGVPV
DKLYPLDVDRAFKKLEEIKPYVTVWWTSGAQSAQLLADGEVDMEMAWNGRVAAVVKEGAP
IGYSFNEGFLQYTSLCILKGAPNLETAVKFVNAALTPEIQANFPAYIDYGPGNPEAYKTG
KISPERAAEMPSSPNNAALQVLVSDEWWSSPAGEEAQKRWAQFIQK
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacagattttccatgctcgtgctttccgcatccgccgccgtcttttcggctgac
ttggcctcggcggaacaggtcaccttcgtctcgcagggcggcgcctaccaggaggcgcag
accaaggcgatcctcgatcccgtcgccaagctgcttggcatcactgtcaatcaggacagc
gcgccggatgcctggccggtgatcaagacgcagtccgcatccggcaagatcgtctgggac
gtcatcgacacgccggcgaaggattgcatacgcggcggggaacagggaatgatcgagaaa
ctcgatttttccaagatacccaatgcggaaaagatgccggccgaatacaaaagcccctat
tcggtcgcctatgaattctactcgagcgtgcttgcctacaacaaggacaagttcggcggc
aacccgcccaagagctggtcggatttctgggatgtaaagaaatttccgggtacgcgggcg
ctgcgtaaccatcccctggcgacacttgaggccgctttgctcgccgatggcgtgccagtg
gacaagctttatccgctcgatgtcgaccgggctttcaagaagctcgaggagatcaaaccc
tatgtcacggtgtggtggacctccggcgcccagtcagcgcagcttctagccgatggtgaa
gtcgacatggagatggcgtggaacggccgcgttgctgcggtggtgaaggaaggcgcgccg
atcggttattcgttcaacgaaggtttccttcagtatacgtcgctctgcattctcaagggc
gcgccgaacctcgaaacggcggtcaagttcgtcaacgcggcgctgacccctgaaatccag
gcgaatttcccggcctatatcgattacggtccaggcaatcctgaagcgtacaagaccggc
aagatttcgccggaacgcgctgccgaaatgccgagttcgccgaacaatgccgcacttcag
gttctggtgtcggatgagtggtggagttcaccagccggtgaggaggcgcaaaaacgctgg
gcgcagttcatccagaaatga
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