Agrobacterium tumefaciens Ach5: Ach5_52800
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Entry
Ach5_52800 CDS
T03816
Name
(GenBank) integration host factor beta subunit
KO
K05788
integration host factor subunit beta
Organism
atf
Agrobacterium tumefaciens Ach5
Brite
KEGG Orthology (KO) [BR:
atf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atf03032
]
Ach5_52800
03036 Chromosome and associated proteins [BR:
atf03036
]
Ach5_52800
03400 DNA repair and recombination proteins [BR:
atf03400
]
Ach5_52800
DNA replication proteins [BR:
atf03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Ach5_52800
Chromosome and associated proteins [BR:
atf03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
Ach5_52800
DNA repair and recombination proteins [BR:
atf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
Ach5_52800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
Pup
HU-DNA_bdg
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
AKC11041
UniProt:
A0A2Z2PFP4
LinkDB
All DBs
Position
pTi:180286..180594
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AA seq
102 aa
AA seq
DB search
MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS
GRNPLNGNAVFIEEKWVPFFRAGKEIRDRLNTAEKSQGRGNL
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atgattaaatcagagcttgttgatttcgttgccgcgaaaaacccatacctccaccgtcgc
gatgcggagaatgccgtcgacgccgtcctcgatgaaatcaccggtgctctcgaaagggga
gaacgcgttgatatccgcagtttcggcacctttgtagtgcggcatcgcccggcgcgttcg
gggcgcaatcccctcaacggcaacgccgttttcatcgaggagaaatgggtgccgttcttt
cgtgccggcaaggagatcagggatcgtcttaatacagcggaaaaatcgcagggcaggggt
aacctttga
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