Arabidopsis thaliana (thale cress): AT1G01880
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Entry
AT1G01880 CDS
T00041
Name
(RefSeq) 5'-3' exonuclease family protein
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT1G01880
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
AT1G01880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPG_I
XPG_N
XPG_I_2
Chromo_2
Motif
Other DBs
NCBI-GeneID:
837373
NCBI-ProteinID:
NP_001320987
TAIR:
AT1G01880
UniProt:
Q9LPD2
A0A178WE55
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Position
1:complement(306467..309541)
Genome browser
AA seq
599 aa
AA seq
DB search
MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKPHLRLTFFRTI
NLFSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEWV
RECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDIKPNS
REPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFSEDQVL
ERLQDIGNGLQPAVPGGIKSGDDGEEFRSEMKKRSPHCSRCGHLGSKRTHFKSSCEHCGC
DSGCIKKPLGFRCECSFCSKDRDLREQKKTNDWWIKVCDKIALAPEFPNRKIIELYLSDG
LMTGDGSSMSWGTPDTGMLVDLMVFKLHWDPSYVRKMLLPMLSTIYLREKARNNTGYALL
CDQYEFHSIKCIKTRYGHQSFVIRWRKPKSTSGYSHSHSEPEESIVVLEEEEESVDPLDG
LNEPQVQNDNGDCFLLTDECIGLVQSAFPDETEHFLHEKKLRESKKKNVSEEETATPRAT
TMGVQRSITDFYRSAKKAAAGQSIETGGSSKASAEKKRQATSTSSSNLTKSVRRRLLFG
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgggaggcaatttctgggatttgctgagaccatatgctcagcaacaaggcttt
gattttctcagaaacaaacgagtcgctgttgatctctccttctggatcgttcagcatgaa
accgctgttaagggtttcgtccttaaacctcacctccgactcactttcttccgtactatc
aacctcttctcaaagtttggagcgtacccggtttttgtggttgatggaacaccatcacct
ttgaaatctcaggcgagaatctccaggtttttccgttcttctggaattgatacttgtaat
ctacctgtgattaaagatggtgtctcggttgagagaaacaagctgttttctgaatgggtt
agggaatgtgtggagctactcgaattgctcggtattccggtgctgaaagctaatggtgag
gctgaagctctctgtgcacagttaaacagccaaggttttgtggatgcttgcattactcct
gatagtgatgctttcctttttggtgctatgtgcgtgatcaaagacatcaagcctaattca
agagaaccttttgaatgctaccatatgtcacatatcgagtctggcctcggtttgaagcgg
aaacacttgattgctatttctctattggtgggaaacgattatgattcaggcggtgttctt
gggattggtgtggataaagcactgcgcattgttcgtgagttttctgaagaccaagtactt
gaaagactacaggacattggaaatgggttgcaacctgcagttcctggtggaatcaaatcc
ggggatgatggtgaagaattccgctcagagatgaaaaaaagatctcctcactgttcccgt
tgtggacacctgggcagcaagagaactcattttaagtcctcttgtgagcactgcggttgt
gatagtggttgcattaaaaaaccattagggtttagatgtgaatgctccttttgttccaag
gatcgagatttaagggaacaaaagaaaaccaatgattggtggatcaaagtctgcgataag
attgctctagcgccagagtttcccaacagaaagattattgaactttatctatccgatggt
ttgatgacaggagatggatcgtcaatgtcttggggaactcctgatactggaatgctagtg
gatctcatggttttcaaactgcactgggacccatcttatgttagaaaaatgttgcttccg
atgctgtcgaccatttatctgagagaaaaggcaagaaacaacacaggatacgctttgttg
tgtgatcaatacgaatttcattcaatcaagtgcataaaaactagatatgggcatcagtcc
tttgtaataaggtggagaaaacccaaatctacaagtggttatagtcatagtcacagcgag
ccagaagaatcaattgttgtattggaagaagaagaagagtctgttgatccgttggatggt
ttaaatgaacctcaggtgcaaaatgataatggtgactgcttcttgctaactgatgaatgc
ataggacttgttcagtctgctttccctgatgaaacagagcattttctacatgagaagaaa
ctgagagagtcgaaaaagaagaatgtttctgaagaagaaacagcaacaccaagagcaaca
acaatgggtgtacaaagaagcattaccgatttctaccgttcagcgaagaaagcagcagca
ggtcaaagtatagagacaggcgggagttcaaaagcttctgcggaaaagaagagacaggca
acttctactagtagtagtaaccttacaaagtcggtcaggcgtcgtctcttgtttggatag
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