Arabidopsis thaliana (thale cress): AT1G04020
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Entry
AT1G04020 CDS
T00041
Symbol
BARD1
Name
(RefSeq) breast cancer associated RING 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AT1G04020 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G04020 (BARD1)
04121 Ubiquitin system [BR:
ath04121
]
AT1G04020 (BARD1)
03036 Chromosome and associated proteins [BR:
ath03036
]
AT1G04020 (BARD1)
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT1G04020 (BARD1)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
AT1G04020 (BARD1)
Ubiquitin system [BR:
ath04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
AT1G04020 (BARD1)
Chromosome and associated proteins [BR:
ath03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
AT1G04020 (BARD1)
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
AT1G04020 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-C3HC4_2
zf-RING_UBOX
zf-RING_6
zf-C3HC4
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-RING_2
zf-HC5HC2H_2
Prok-RING_4
zf-RING_10
PTCB-BRCT
PHD_NSD
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
839329
NCBI-ProteinID:
NP_001318917
TAIR:
AT1G04020
UniProt:
A0A384KH31
A0A178W540
LinkDB
All DBs
Position
1:1036493..1040262
Genome browser
AA seq
713 aa
AA seq
DB search
MAEFTNMLMNPWVLHLQKLELELKCPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESGCP
VCKSKHPKKARRDLRFMESVISIYKSLNAAVSVHLPQLQIPNDCNYKNDALNNSNSPKHG
ESEDSEMTDKDVSKRSGGTDSSSRDGSPLPTSEESDPRPKHQDWTEKQLSDHLLLYEFES
EYDAANHTPESYTEQAAKNVRDITASEQPSNAARKRICGDSFIQESSPNPKTQDPTLLRL
MESLRSDDPTDYVKAQNHQLPKSHTEQDSKRKRDITASDAMENHLKVPKRENNLMQKSAD
IDCNGKCSANSDDQLSEKISKALEQTSSNITICGFCQSARVSEATGEMLHYSRGRPVDGD
DIFRSNVIHVHSACIEWAPQVYYEGDTVKNLKAELARGMKIKCTKCSLKGAALGCFVKSC
RRSYHVPCAREISRCRWDYEDFLLLCPAHSSVKFPNEKSGHRVSRAEPLPKINPAELCSL
EQTPAFTKELVLCGSALSKSDKKLMESLAVRFNATISRYWNPSVTHVIASTDEKGACTRT
LKVLMGILNGKWIINAAWMKASLKASQPVDEEPFEIQIDTQGCQDGPKTARLRAETNKPK
LFEGLKFYFFGDFYKGYKEDLQNLVKVAGGTILNTEDELGAESSNNVNDQRSSSIVVYNI
DPPHGCALGEEVTIIWQRANDAEALASQTGSRLVGHTWVLESIAGYKLHPVIG
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatttactaacatgctaatgaatccatgggttcttcatctccagaagctcgag
ctcgagctcaagtgccctctatgcttaaaattgcttaatcgaccggtgttgcttccttgc
gaccacgtcttctgcgattcatgtgtacacaaatcgtcgcaagttgaatcgggatgtcct
gtctgcaaatctaaacatcccaaaaaggctaggagagatcttcgattcatggagagtgtt
ataagcatatacaagagcttgaatgcagctgttagtgttcatctcccacaattacagatt
ccaaatgattgcaactacaagaacgatgcattgaacaattccaacagccctaaacatggc
gaatctgaagattctgagatgactgacaaggatgtgagcaagcgcagtggtggtactgat
tcttctagtcgtgatggttctcctcttccgacctcagaagaaagtgatccaagacctaag
catcaggattggactgaaaagcagttgagtgatcatctcctattatatgagtttgaatca
gagtatgatgctgccaatcacactccggaaagttatacagaacaagctgcaaaaaatgtg
agggacatcactgcttctgagcagcctagcaatgctgcaaggaagcggatatgtggtgat
tcctttatccaggaaagcagtccgaatcctaagactcaggatccgactttgctgcggttg
atggagagcctccggtcagatgatcccactgattatgttaaagcacagaaccatcagtta
cccaaaagtcatacagaacaagattcaaaaaggaagcgtgacatcaccgcttctgatgca
atggaaaatcatctgaaggtccccaagagggagaataatctgatgcaaaaatctgctgat
attgactgcaatggtaaatgctctgcaaactctgatgatcagctaagtgagaaaatctca
aaggcattagaacaaacatcatccaacataaccatttgtggtttctgccaatccgctagg
gtatctgaggccactggagaaatgctgcattactctaggggaagaccggtggatggagat
gacatcttccgctccaatgttatccatgtccatagcgcatgtatcgaatgggcaccgcaa
gtttactatgaaggtgacacagtgaagaacctgaaagcagaactggcaagggggatgaaa
atcaagtgcactaaatgtagtctgaaaggtgctgccttaggctgctttgtcaagtcttgc
cgtcgaagctatcatgttccatgtgcaagagagatttctagatgccgttgggattatgaa
gattttcttctactttgtccggctcattcttctgtcaaattcccgaacgagaagtctgga
catcgcgtttccagagccgagcccttaccaaaaataaatcctgctgagctatgttctttg
gaacaaacaccagcttttacaaaagagcttgttctctgtggatcagcactctctaaaagt
gataagaaactgatggaaagtttagccgttcgatttaacgcgaccatatcaaggtactgg
aacccaagtgttacacatgtgattgcttctacagatgaaaaaggagcttgcacaagaact
ttgaaggttcttatgggtattctcaatggaaaatggattatcaatgcagcttggatgaaa
gcaagcctaaaagcttctcaacctgttgatgaagaaccattcgagattcaaattgatact
caaggatgtcaagatggaccaaaaaccgcaagactcagagcagaaactaataaaccaaag
ctctttgagggcttgaagttctatttctttggagatttctataaaggatacaaggaagac
cttcagaatctagtcaaagtcgctggtggtacaatcttgaacacagaggatgagcttggt
gcagaaagcagcaacaatgtcaatgaccaaagatcatcatcgattgtggtttacaacatt
gatcctccacatggatgtgccttaggtgaagaagtcacaatcatttggcaacgagctaat
gacgcagaagctttagcaagccaaactgggtctcgtctcgttggtcacacatgggtcttg
gagtccattgctggttacaagttacatcctgtgattggctaa
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