Arabidopsis thaliana (thale cress): AT1G04680
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Entry
AT1G04680 CDS
T00041
Name
(RefSeq) Pectin lyase-like superfamily protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00040
Pentose and glucuronate interconversions
ath01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AT1G04680
Enzymes [BR:
ath01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
AT1G04680
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
839452
NCBI-ProteinID:
NP_563715
TAIR:
AT1G04680
UniProt:
Q940Q1
A0A178W464
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Position
1:complement(1303467..1307973)
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AA seq
431 aa
AA seq
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MAVLPTWLLAMMCLLFFVGAMENTTHDNISSLPRSDETEWNQHAVTNPDEVADEVLALTE
MSVRNHTERRKLGYFTCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAIGGRDGRFY
VVTDPRDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVH
IANGGCITIQFVTNVIVHGLHIHDCKPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVW
IDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVMLLGHSDSYMRDKAMQVTIAYNHF
GVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFAKEVTKR
VDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLSAKSSSLVGHITSDAGA
LPCRRGRQCSS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcttccgacatggcttttagcaatgatgtgtttactcttcttcgtcggagct
atggagaacactacacacgacaacatctcttctctccctagatccgacgaaaccgaatgg
aaccaacacgcagtgacgaatccagatgaagtagcggacgaagttctcgccttgacagaa
atgagtgtgagaaaccataccgagaggaggaaactaggttactttacttgcggaacagga
aaccctatcgacgattgttggcgatgtgaccccaattggcacaagaaccgtaaacgccta
gcggattgcggtatcggatttggaagaaacgcgatcggtggtcgtgatggacgattctac
gtagtcactgacccaagagacgacaatccggttaaccctagaccggggactttacgtcac
gccgtgatccaagaccgaccactatggatcgttttcaaacgtgacatggtgattcagcta
aaacaagagcttatcgttaacagtttcaaaacgatcgatggacgtggcgcaaacgttcac
attgctaacggtggttgcatcacgattcagtttgtgacgaatgtgatcgttcacggattg
catattcatgactgtaaaccaactggtaacgctatggtgagaagctcagagacgcatttt
gggtggaggacaatggcagatggtgacgcgatttcgatctttggatcgagtcatgtatgg
attgatcataactcgttgtcccattgcgctgatgggcttgtggacgcagtcatgggctca
accgcgattaccatctctaacaaccacttaactcaccataacgaggttatgttgctagga
catagtgactcgtacatgagggacaaagctatgcaagtgaccattgcttacaatcatttt
ggagtcggacttattcaaagaatgccgaggtgtcgacacgggtacttccatgttgttaac
aacgactacactcactgggaaatgtacgcaataggtggtagcgcaaacccgacaatcaac
agtcaaggaaaccgctatgccgccccaaaaaacccctttgctaaagaggtgacgaagaga
gtggacacaccggctagtcattggaaaggatggaattggagatcggaaggagatttgctt
cagaacggtgcttacttcacttcttcaggagccgccgcgtctggcagctacgcacgtgcc
tccagcctttccgcgaaatcttcgtcattggtcggacacattacttccgacgctggagct
ctaccttgtcgcagaggacgtcaatgttcctcatag
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