Arabidopsis thaliana (thale cress): AT1G05460
Help
Entry
AT1G05460 CDS
T00041
Symbol
SDE3
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolases superfamily protein
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G05460 (SDE3)
03036 Chromosome and associated proteins [BR:
ath03036
]
AT1G05460 (SDE3)
Enzymes [BR:
ath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
AT1G05460 (SDE3)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
AT1G05460 (SDE3)
Chromosome and associated proteins [BR:
ath03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
AT1G05460 (SDE3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
Helicase_RecD
DEAD
SLFN-g3_helicase
Mov-10_helical
PhoH
ATPase_2
AAA
AAA_16
NPHP3_N
DAP3
Motif
Other DBs
NCBI-GeneID:
837047
NCBI-ProteinID:
NP_172037
TAIR:
AT1G05460
UniProt:
Q8GYD9
A0A654EHN2
LinkDB
All DBs
Position
1:complement(1601148..1605034)
Genome browser
AA seq
1002 aa
AA seq
DB search
MSVSGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFPFKKEKPQSVT
VGETSFDSFTVKNTMDEPVDLWTKIYASNPEDSFTLSILKPPSKDSDLKERQCFYETFTL
EDRMLEPGDTLTIWVSCKPKDIGLHTTVVTVDWGSDRVERVVFLLAEDKISSSLTSNRPY
SRSRRAPKKDFAVDDYVKGSRPSKVVERSFRNRLPLYEIPKEIREMIENKEFPDDLNEGL
TARNYANYYKTLLIMEELQLEEDMRAYDMENVSMKRRGIYLSLEVPGLAERRPSLVHGDF
IFVRHAYDDGTDHAYQGFVHRVEADEVHMKFASEFHQRHTAGSVYNVRFTYNRINTRRLY
QAVDAAEMLDPNFLFPSLHSGKRMIKTKPFVPISPALNAEQICSIEMVLGCKGAPPYVIH
GPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRL
NAATRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGHFT
HILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERL
FECDYYCEGDENYVTKLVKNYRCHPEILDLPSKLFYDGELVASKEDTDSVLASLNFLPNK
EFPMVFYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVM
KIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFN
VAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGCGLPEQEEFVEEPFKQEGSS
NGPQYPPEAEWNNSGELNNGGANENGEWSDGWNNNGGTKEKNEWSDGWNSNGGGTKKKDE
WSDGWDNNGGTNGINQEGSSNAPQDPQEAEWNDSGEVKNGGTKEKDVRSDGWNNNGGKNE
KEECCDGWKDGGSGEEIKNGGKFETRGDFVAKEEDEWSDGWK
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgagtggatacaaatcggatgacgaatattctgtaatcgcagacaagggagag
attggatttatagactatcagaatgatggatcttctggttgctacaatccatttgatgaa
ggtccagttgttgtttctgttcctttcccatttaagaaagagaagcctcaatctgtaact
gttggagagacttcttttgattccttcactgtcaagaacactatggatgagcctgttgat
ctctggactaagatttacgcatctaaccctgaggattcttttactctctcgatattgaaa
ccgccttcgaaagattcagacttgaaagagagacagtgtttttatgaaacttttactctg
gaagataggatgcttgagcctggtgacactttgaccatttgggtgtcttgtaagcctaag
gacattggtttacataccactgttgttactgttgactggggaagtgatagggttgagcgg
gttgttttccttttggctgaggataagatttcgagttctctgacttctaacaggccttac
tctagaagtagaagggctccgaagaaagattttgctgtggatgattatgtgaagggatca
cgcccttcaaaggtggttgaacgtagttttagaaataggcttcctctgtatgaaattcca
aaggagattagagagatgatcgagaataaggaattccctgatgatttgaacgaaggtctt
acagcaaggaactatgctaactactataaaactttactgattatggaagaattacaactc
gaggaagacatgcgagcttatgatatggagaatgtttcaatgaagagaaggggtatctat
ttgtccctcgaagttcctggccttgctgagagaagaccttcccttgtccatggagacttc
atctttgttagacatgcatatgatgatggaactgaccacgcttatcagggctttgtacac
cgcgtagaggcggatgaagtacatatgaagtttgcctctgagttccaccaacgccacaca
gctgggagtgtctataatgtgaggttcacatacaatcgaatcaacactagaaggttgtat
caggctgttgatgcggcagaaatgttggatccaaacttccttttcccatccttgcactct
gggaaaaggatgataaagacaaaaccctttgtgcccatttcaccagctcttaatgcagag
cagatttgttccattgaaatggttcttggctgcaaaggagcaccaccatatgtaatccat
ggacctcctggtactgggaaaaccatgacattggtggaggctatagttcaactttataca
acacagagaaatgctcgggttcttgtctgtgctccctccaatagtgcagctgatcacatt
ttagagaaactcctttgtttagagggagttcgcatcaaggacaatgagattttcaggctg
aatgcagctactcgttcatatgaagaaattaagcctgagattatccgcttttgcttcttt
gatgagttaattttcaagtgcccccctctcaaagctttgactcgttacaaactcgttgtg
tcaacatatatgagtgcatcgcttcttaacgcggaaggtgtaaaccgtggtcacttcact
catattctcttagatgaggctggtcaagcttcagagcctgaaaacatgattgctgtatca
aatctctgcttgacagaaactgtggttgtgcttgctggagatccaaggcaattgggtccg
gttatatactcaagagatgctgagtcactcggcttggggaagtcatacttggaaagattg
tttgagtgtgattattactgcgaaggggatgagaattatgtaacaaagctagtcaagaac
tacagatgccacccagagattcttgatctcccgtcaaagctcttctatgatggagaactg
gtagcttccaaagaagacacagactctgttcttgcctcgttaaacttccttccaaacaaa
gaatttccgatggttttctatgggatccaaggatgcgatgagagggaaggtaacaatccg
tcctggttcaaccgtatagagatcagcaaagttatagagacaatcaagagattaacagcg
aatgactgtgtgcaagaagaggatatcggagttataactccttacaggcagcaagtaatg
aagatcaaggaggttcttgacaggttagatatgactgaagtcaaagttggtagtgtagag
caattccaaggtcaagagaaacaggtcatcatcatttcaactgtaagatctactatcaaa
cacaacgagttcgatagagcctattgtctgggcttcctgagcaatccaaggaggtttaat
gtcgccataacccgtgcaatctctctgctagtgatcatcggaaacccacatatcatatgc
aaggacatgaactggaacaagcttttgtggcgatgtgtggataacaatgcttaccaagga
tgcggtttaccagagcaggaggagtttgtggaggaaccattcaagcaagaaggaagcagc
aatgggcctcaataccctccagaagctgagtggaacaacagtggagagctcaacaatggt
ggtgcgaatgagaatggtgaatggtctgatgggtggaacaacaatggcggcacaaaggaa
aaaaatgaatggtctgatggatggaacagcaatggtggtgggacaaagaagaaagatgaa
tggtctgatgggtgggacaacaatggcggcacaaacgggatcaatcaagaaggaagcagc
aacgctccccaagaccctcaagaagccgagtggaacgatagtggcgaggtcaagaatggt
ggcacaaaggagaaagatgtcaggtctgatgggtggaacaacaatggcggaaaaaatgaa
aaagaagaatgttgtgatggttggaaagacggcggcagtggtgaagagatcaagaatggt
ggtaagtttgaaaccagaggtgattttgtagccaaggaagaagatgagtggtctgatggg
tggaagtaa
DBGET
integrated database retrieval system
