Arabidopsis thaliana (thale cress): AT1G06450
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Entry
AT1G06450 CDS
T00041
Name
(RefSeq) Polynucleotidyl transferase, ribonuclease H-like superfamily protein
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G06450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G06450
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT1G06450
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AT1G06450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
PspC
DEDDh_C
Motif
Other DBs
NCBI-GeneID:
837157
NCBI-ProteinID:
NP_172133
TAIR:
AT1G06450
UniProt:
Q9SHJ0
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Position
1:1965840..1967219
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AA seq
360 aa
AA seq
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MNEIHQPLARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAM
KGNVENTKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIR
DEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVV
KVFGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHV
YEDSRFARGLIYGIGKSNLVAAPAPAPVPEPTLPLMCQQNVASYPVFHNGYVQNYEQPQL
VSYDPSGAPWAFCNATGTYVQLTHLPASTFAYPSQTPSATVDYLGPVPNYYNNNACYVVE
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagattcatcaaccgctggcgaggagagtatggagaagcaacgtcgatgaagag
atggctcgtatggccgaatgtctcaagcgattcccactcatcgctttcgatacagagtac
cctggcattattttccgcacttatttcgattcctctagcgacgaatgttacagagccatg
aaaggtaatgtcgagaacaccaagctgatccagtgtggtttcactcttttcaacgccaag
ggagagatcggtggtgtttgggagattaacttctccaatttcggcgacccatcagacaca
cgcaacgagctttccatcgaattcttgaggaggcatggtttggatttgcagaagattaga
gacgaaggagttgatatgttcggctacgggtttttccctaagcttatgactgtgtttcgt
tctcagaaacacgttgagttcgtcactttccaaggagcttacgatttcgcttacttcttg
agtatcctcaatcatggcaagctaccagagactcacggcgagtttgcaacagaggttgtc
aaagtgttcggtcaagtttacgacaccaaggtcatggctggattctgtgaaggactaggt
gaacacctcgggttaagcaaactagcccagctacttcagatcactcgtgtgggaagagca
catcacgctggttcagacagcttaatgactgcacttgtcttcatcaagcttaaacatgtc
tatgaagattccagatttgctagaggattgatctatggaattgggaaaagcaacctcgtt
gccgcccctgcccctgcgcctgtgccagagccgactcttcctttgatgtgccagcagaat
gtagcttcatatcctgtgttccacaatggatatgtccagaactatgagcagcctcagctt
gtctcctacgatccttcaggtgccccatgggcgttctgtaatgctaccggtacgtatgtg
cagcttactcatctacctgcaagcacttttgcatacccgtctcagacgccatctgctact
gttgattatcttggaccagttcctaattattacaacaataatgcttgctacgtagttgag
tag
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